RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PCSK1NQ9UHG2 260 aa21.32■■□□□ 1
CLN3-230ENST00000568076 DERAQ9Y315 318 aa21.32■■□□□ 1
CLN3-230ENST00000568076 ANKRD65E5RJM6 399 aa21.32■■□□□ 1
CLN3-230ENST00000568076 E5RJQ4 531 aa21.32■■□□□ 1
CLN3-230ENST00000568076 DNALI1O14645 258 aaPredicted RBP21.32■■□□□ 1
CLN3-230ENST00000568076 FAM107AO95990 144 aa21.32■■□□□ 1
CLN3-230ENST00000568076 DARSP14868 501 aaKnown RBP21.32■■□□□ 1
CLN3-230ENST00000568076 MIPP30301 263 aa21.32■■□□□ 1
CLN3-230ENST00000568076 ARSEP51690 589 aa21.32■■□□□ 1
CLN3-230ENST00000568076 DYNLT1P63172 113 aa21.32■■□□□ 1
CLN3-230ENST00000568076 ADAM17P78536 824 aa21.32■■□□□ 1
CLN3-230ENST00000568076 MYO1EQ12965 1108 aa21.32■■□□□ 1
CLN3-230ENST00000568076 MAP2K5Q13163 448 aa21.32■■□□□ 1
CLN3-230ENST00000568076 TLK2Q86UE8 772 aa21.32■■□□□ 1
CLN3-230ENST00000568076 SLC35B2Q8TB61 432 aa21.32■■□□□ 1
CLN3-230ENST00000568076 TMEM121Q9BTD3 319 aa21.32■■□□□ 1
CLN3-230ENST00000568076 KIAA1257Q9ULG3 409 aa21.32■■□□□ 1
CLN3-230ENST00000568076 EFR3BQ9Y2G0 817 aa21.32■■□□□ 1
CLN3-230ENST00000568076 SNX9Q9Y5X1 595 aa21.32■■□□□ 1
CLN3-230ENST00000568076 SCN1AP35498 2009 aa21.32■■□□□ 1
CLN3-230ENST00000568076 TULP2O00295 520 aa21.31■■□□□ 1
CLN3-230ENST00000568076 ITGAVP06756 1048 aa21.31■■□□□ 1
CLN3-230ENST00000568076 RAB6CQ53S08 254 aa21.31■■□□□ 1
CLN3-230ENST00000568076 GLRA4Q5JXX5 417 aa21.31■■□□□ 1
CLN3-230ENST00000568076 PPP1R26Q5T8A7 1209 aaPredicted RBP21.31■■□□□ 1
CLN3-230ENST00000568076 SH3PXD2AQ5TCZ1 1133 aa21.31■■□□□ 1
CLN3-230ENST00000568076 CST9Q5W186 159 aa21.31■■□□□ 1
CLN3-230ENST00000568076 NOTUMQ6P988 496 aa21.31■■□□□ 1
CLN3-230ENST00000568076 ALKAL1Q6UXT8 129 aa21.31■■□□□ 1
CLN3-230ENST00000568076 FAM183BPQ6ZVS7 135 aa21.31■■□□□ 1
CLN3-230ENST00000568076 RELL1Q8IUW5 271 aa21.31■■□□□ 1
CLN3-230ENST00000568076 ZCCHC9Q8N567 271 aaKnown RBP21.31■■□□□ 1
CLN3-230ENST00000568076 CCHCR1Q8TD31 782 aa21.31■■□□□ 1
CLN3-230ENST00000568076 TMEM40Q8WWA1 233 aa21.31■■□□□ 1
CLN3-230ENST00000568076 RAB6CQ9H0N0 254 aa21.31■■□□□ 1
CLN3-230ENST00000568076 NXF3Q9H4D5 531 aaKnown RBP21.31■■□□□ 1
CLN3-230ENST00000568076 RALGAPA2Q2PPJ7 1873 aa21.31■■□□□ 1
CLN3-230ENST00000568076 GMNCA6NCL1 334 aa21.3■■□□□ 1
CLN3-230ENST00000568076 MYO1CO00159 1063 aa21.3■■□□□ 1
CLN3-230ENST00000568076 IGF2BP3O00425 579 aaKnown RBP eCLIP21.3■■□□□ 1
CLN3-230ENST00000568076 CHN1P15882 459 aa21.3■■□□□ 1
CLN3-230ENST00000568076 MFSD10Q14728 455 aa21.3■■□□□ 1
CLN3-230ENST00000568076 CCL14Q16627 93 aa21.3■■□□□ 1
CLN3-230ENST00000568076 GOLGA7BQ2TAP0 167 aa21.3■■□□□ 1
CLN3-230ENST00000568076 BBS12Q6ZW61 710 aa21.3■■□□□ 1
CLN3-230ENST00000568076 TTC39CQ8N584 583 aa21.3■■□□□ 1
CLN3-230ENST00000568076 DNAJB3Q8WWF6 145 aa21.3■■□□□ 1
CLN3-230ENST00000568076 PEBP4Q96S96 227 aa21.3■■□□□ 1
CLN3-230ENST00000568076 RRAGCQ9HB90 399 aa21.3■■□□□ 1
CLN3-230ENST00000568076 DOCK3Q8IZD9 2030 aa21.3■■□□□ 1
CLN3-230ENST00000568076 CST8O60676 142 aa21.3■■□□□ 1
CLN3-230ENST00000568076 TRUB2O95900 331 aaKnown RBP21.3■■□□□ 1
CLN3-230ENST00000568076 ZNF143P52747 638 aaPredicted RBP21.3■■□□□ 1
CLN3-230ENST00000568076 ZNF200P98182 395 aaPredicted RBP21.3■■□□□ 1
CLN3-230ENST00000568076 CDC42EP1Q00587 391 aa21.3■■□□□ 1
CLN3-230ENST00000568076 OTUD4Q01804 1114 aaKnown RBP21.3■■□□□ 1
CLN3-230ENST00000568076 GPS1Q13098 491 aa21.3■■□□□ 1
CLN3-230ENST00000568076 ACAP1Q15027 740 aa21.3■■□□□ 1
CLN3-230ENST00000568076 CCDC38Q502W7 563 aa21.3■■□□□ 1
CLN3-230ENST00000568076 PKDCCQ504Y2 493 aa21.3■■□□□ 1
CLN3-230ENST00000568076 CMASQ8NFW8 434 aaPredicted RBP21.3■■□□□ 1
CLN3-230ENST00000568076 ACTL9Q8TC94 416 aa21.3■■□□□ 1
CLN3-230ENST00000568076 IPO4Q8TEX9 1081 aaKnown RBP21.3■■□□□ 1
CLN3-230ENST00000568076 SELENOSQ9BQE4 189 aa21.3■■□□□ 1
CLN3-230ENST00000568076 FAM107BQ9H098 131 aa21.3■■□□□ 1
CLN3-230ENST00000568076 USP18Q9UMW8 372 aa21.3■■□□□ 1
CLN3-230ENST00000568076 C2CD4BA6NLJ0 364 aa21.29■■□□□ 1
CLN3-230ENST00000568076 AKAP5P24588 427 aa21.29■■□□□ 1
CLN3-230ENST00000568076 ERMARDQ5T6L9 678 aa21.29■■□□□ 1
CLN3-230ENST00000568076 OR6B2Q6IFH4 312 aa21.29■■□□□ 1
CLN3-230ENST00000568076 CHADLQ6NUI6 762 aa21.29■■□□□ 1
CLN3-230ENST00000568076 CYP4V2Q6ZWL3 525 aaPredicted RBP21.29■■□□□ 1
CLN3-230ENST00000568076 ACOT1Q86TX2 421 aa21.29■■□□□ 1
CLN3-230ENST00000568076 TTC30AQ86WT1 665 aa21.29■■□□□ 1
CLN3-230ENST00000568076 C9orf72Q96LT7 481 aa21.29■■□□□ 1
CLN3-230ENST00000568076 RBM15Q96T37 977 aaKnown RBP eCLIP21.29■■□□□ 1
CLN3-230ENST00000568076 C10orf88Q9H8K7 445 aa21.29■■□□□ 1
CLN3-230ENST00000568076 CNTN3Q9P232 1028 aa21.29■■□□□ 1
CLN3-230ENST00000568076 HAS3O00219 553 aa21.28■■□□□ 1
CLN3-230ENST00000568076 TREHO43280 583 aa21.28■■□□□ 1
CLN3-230ENST00000568076 RNF8O76064 485 aa21.28■■□□□ 1
CLN3-230ENST00000568076 RECQL4O94761 1208 aa21.28■■□□□ 1
CLN3-230ENST00000568076 RGS7P49802 495 aa21.28■■□□□ 1
CLN3-230ENST00000568076 YARSP54577 528 aaKnown RBP21.28■■□□□ 1
CLN3-230ENST00000568076 PLCB3Q01970 1234 aa21.28■■□□□ 1
CLN3-230ENST00000568076 PMF1Q6P1K2 205 aa21.28■■□□□ 1
CLN3-230ENST00000568076 APBB1IPQ7Z5R6 666 aaPredicted RBP21.28■■□□□ 1
CLN3-230ENST00000568076 EXOC3L1Q86VI1 746 aa21.28■■□□□ 1
CLN3-230ENST00000568076 KCTD6Q8NC69 237 aa21.28■■□□□ 1
CLN3-230ENST00000568076 BEST2Q8NFU1 509 aa21.28■■□□□ 1
CLN3-230ENST00000568076 ATXN2LQ8WWM7 1075 aaKnown RBP21.28■■□□□ 1
CLN3-230ENST00000568076 RXFP2Q8WXD0 754 aa21.28■■□□□ 1
CLN3-230ENST00000568076 HSPH1Q92598 858 aa21.28■■□□□ 1
CLN3-230ENST00000568076 CENPTQ96BT3 561 aa21.28■■□□□ 1
CLN3-230ENST00000568076 SERPINB12Q96P63 405 aa21.28■■□□□ 1
CLN3-230ENST00000568076 XPO6Q96QU8 1125 aaKnown RBP21.28■■□□□ 1
CLN3-230ENST00000568076 ASNSD1Q9NWL6 643 aa21.28■■□□□ 1
CLN3-230ENST00000568076 CTNNAL1Q9UBT7 734 aa21.28■■□□□ 1
CLN3-230ENST00000568076 GRAP2O75791 330 aa21.28■■□□□ 1
CLN3-230ENST00000568076 PECAM1P16284 738 aaPredicted RBP21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms