RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	CRTAC1	Q9NQ79	661 aa		7.39	□□□□□ -1.23
SF3B3-209	ENST00000567635	UXT	Q9UBK9	157 aa	Predicted RBP	7.39	□□□□□ -1.23
SF3B3-209	ENST00000567635	NXF1	Q9UBU9	619 aa	Known RBP	7.39	□□□□□ -1.23
SF3B3-209	ENST00000567635	MAPK8IP1	Q9UQF2	711 aa		7.39	□□□□□ -1.23
SF3B3-209	ENST00000567635	TRAF3IP3	Q9Y228	551 aa		7.39	□□□□□ -1.23
SF3B3-209	ENST00000567635	COL4A2	P08572	1712 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	NCAN	O14594	1321 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	SHISA7	A6NL88	538 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635		A8MXQ7	604 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	ARNTL	O00327	626 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	MAPK13	O15264	365 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	GFRA3	O60609	400 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	NOL4	O94818	638 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	VNN1	O95497	513 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	PRAMEF12	O95522	483 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	P4HA1	P13674	534 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	CCNE1	P24864	410 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	TARS	P26639	723 aa	Known RBP	7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	AVPR1A	P37288	418 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	GRIK1	P39086	918 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	RPS9	P46781	194 aa	Known RBP	7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	VAMP7	P51809	220 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	KPNA1	P52294	538 aa	Predicted RBP	7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	PSMC1	P62191	440 aa	Known RBP	7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	DLG4	P78352	724 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	PLCB2	Q00722	1185 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	CYP27A1	Q02318	531 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	ADAM9	Q13443	819 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	FZD5	Q13467	585 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	NCOA4	Q13772	614 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	NFIL3	Q16649	462 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	CCDC142	Q17RM4	750 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	ZACN	Q401N2	412 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	ZNF667	Q5HYK9	610 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	MDH1B	Q5I0G3	518 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	CEP135	Q66GS9	1140 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	TXNDC8	Q6A555	127 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	SV2A	Q7L0J3	742 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	FRMD5	Q7Z6J6	570 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	FMR1NB	Q8N0W7	255 aa	Predicted RBP	7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	GUF1	Q8N442	669 aa	Known RBP	7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	BPIFB1	Q8TDL5	484 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	FAM3C	Q92520	227 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	TAF4B	Q92750	862 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	CYP2S1	Q96SQ9	504 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	SMG9	Q9H0W8	520 aa	Known RBP	7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	C8orf33	Q9H7E9	229 aa	Predicted RBP	7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	VRTN	Q9H8Y1	702 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	GKN1	Q9NS71	199 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	TDP1	Q9NUW8	608 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	SPATA6	Q9NWH7	488 aa	Predicted RBP	7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	NDRG2	Q9UN36	371 aa	Known RBP	7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	PIAS3	Q9Y6X2	628 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	OTOGL	Q3ZCN5	2332 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	WDR87	Q6ZQQ6	2873 aa		7.38	□□□□□ -1.23
SF3B3-209	ENST00000567635	GVINP1	Q7Z2Y8	2422 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	TRIM66	O15016	1216 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	LAMTOR5	O43504	91 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	CLSTN1	O94985	981 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	SMC2	O95347	1197 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	USP17L7	P0C7H9	530 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	SP9	P0CG40	484 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	KRT13	P13646	458 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	NR2F2	P24468	414 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	ANXA13	P27216	316 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	PSMC2	P35998	433 aa	Known RBP	7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	PPP3CC	P48454	512 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	CDH8	P55286	799 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	CSTF1	Q05048	431 aa	Known RBP	7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	PNOC	Q13519	176 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	ZNF699	Q32M78	642 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	ITPRIPL2	Q3MIP1	535 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	ZNF528	Q3MIS6	628 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	C1orf220	Q5T0J3	134 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	C1orf228	Q6PIY5	440 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	MAMSTR	Q6ZN01	415 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	INTS8	Q75QN2	995 aa	Known RBP	7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	RALGPS2	Q86X27	583 aa	Predicted RBP	7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	FAM186B	Q8IYM0	893 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	ZNF687	Q8N1G0	1237 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	B3GALNT2	Q8NCR0	500 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	STKLD1	Q8NE28	680 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	ENGASE	Q8NFI3	743 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	TTC8	Q8TAM2	541 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	USP13	Q92995	863 aa	Predicted RBP	7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	NKD2	Q969F2	451 aa	Predicted RBP	7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	MYLPF	Q96A32	169 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	MSANTD3	Q96H12	275 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	PCED1B	Q96HM7	432 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	ZFYVE19	Q96K21	471 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	C8orf48	Q96LL4	319 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	GSDMA	Q96QA5	445 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	B3GNT5	Q9BYG0	378 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	GTPBP4	Q9BZE4	634 aa	Known RBP	7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	SEMA4A	Q9H3S1	761 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	SMYD3	Q9H7B4	428 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	LMAN1L	Q9HAT1	526 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	RMND1	Q9NWS8	449 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	EHD2	Q9NZN4	543 aa		7.37	□□□□□ -1.23
SF3B3-209	ENST00000567635	HOOK1	Q9UJC3	728 aa	Known RBP	7.37	□□□□□ -1.23

Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms