RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 ERICH1Q86X53 443 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 AGGF1Q8N302 714 aaeCLIP13.91□□□□□ -0.18
VPS4A-204ENST00000566354 MCPH1Q8NEM0 835 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 AFG1LQ8WV93 481 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 LENG1Q96BZ8 264 aaPredicted RBP13.91□□□□□ -0.18
VPS4A-204ENST00000566354 RBM41Q96IZ5 413 aaKnown RBP13.91□□□□□ -0.18
VPS4A-204ENST00000566354 ANKRD27Q96NW4 1050 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 SMC6Q96SB8 1091 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 MYLK2Q9H1R3 596 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 CYP26B1Q9NR63 512 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 PARVAQ9NVD7 372 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 IP6K2Q9UHH9 426 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 USTQ9Y2C2 406 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 NDC80O14777 642 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 HGSO14964 777 aaPredicted RBP13.91□□□□□ -0.18
VPS4A-204ENST00000566354 SPAG7O75391 227 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 LGR5O75473 907 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 C4BPAP04003 597 aaKnown RBP13.91□□□□□ -0.18
VPS4A-204ENST00000566354 ZNF865P0CJ78 1059 aaPredicted RBP13.91□□□□□ -0.18
VPS4A-204ENST00000566354 FLT3LGP49771 235 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 DNAJC3Q13217 504 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 LAMC2Q13753 1193 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 RASA2Q15283 850 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 PDK4Q16654 411 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 FAM160B1Q5W0V3 765 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 OLFML2BQ68BL8 750 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 FEZF2Q8TBJ5 459 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 INPP5DQ92835 1189 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 TMEM237Q96Q45 408 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 ZNF148Q9UQR1 794 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 DRG1Q9Y295 367 aaKnown RBP13.91□□□□□ -0.18
VPS4A-204ENST00000566354 DNAH12Q6ZR08 3092 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 DGAT1O75907 488 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 IGHA2P01877 340 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 KRT15P19012 456 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 GNA15P30679 374 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 PIK3CAP42336 1068 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 PRKCZQ05513 592 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 MORF4L2Q15014 288 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 CCDC142Q17RM4 750 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 IQSEC1Q6DN90 963 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 PRUNE1Q86TP1 453 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 ERP27Q96DN0 273 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 ZNF570Q96NI8 536 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 DNPEPQ9ULA0 475 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.9□□□□□ -0.18
VPS4A-204ENST00000566354 POC1B-GALNT4F8VUJ3 575 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 ALOX15BO15296 676 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 EDF1O60869 148 aaKnown RBP13.9□□□□□ -0.18
VPS4A-204ENST00000566354 GJC1P36383 396 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 ARSEP51690 589 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 TNFAIP2Q03169 654 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 MCL1Q07820 350 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 CUL2Q13617 745 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 TMEM270Q6UE05 265 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 BZW1Q7L1Q6 419 aaKnown RBP13.9□□□□□ -0.18
VPS4A-204ENST00000566354 PASD1Q8IV76 773 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 ALLCQ8N6M5 410 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 LRRC8CQ8TDW0 803 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 UTP4Q969X6 686 aaKnown RBP13.9□□□□□ -0.18
VPS4A-204ENST00000566354 SLITRK1Q96PX8 696 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 XPNPEP1Q9NQW7 623 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 PDLIM7Q9NR12 457 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 ARHGAP28Q9P2N2 729 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 SLC24A2Q9UI40 661 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 CHKBQ9Y259 395 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 PCDHB4Q9Y5E5 795 aa13.9□□□□□ -0.18
VPS4A-204ENST00000566354 CFHP08603 1231 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 PECAM1P16284 738 aaPredicted RBP13.89□□□□□ -0.19
VPS4A-204ENST00000566354 LIG4P49917 911 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 RASSF2P50749 326 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 PKN2Q16513 984 aaKnown RBP13.89□□□□□ -0.19
VPS4A-204ENST00000566354 SPDYAQ5MJ70 313 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 ANKRD20A2Q5SQ80 823 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 ANKRD20A1Q5TYW2 823 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 LRRC38Q5VT99 294 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 ANKRD20A3Q5VUR7 823 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 TDRD10Q5VZ19 366 aaKnown RBP13.89□□□□□ -0.19
VPS4A-204ENST00000566354 OR6J1Q8NGC5 347 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 PPTC7Q8NI37 304 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 TRIB2Q92519 343 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 EMID1Q96A84 441 aaPredicted RBP13.89□□□□□ -0.19
VPS4A-204ENST00000566354 FAM84AQ96KN4 292 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 CFHR5Q9BXR6 569 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 CNTN6Q9UQ52 1028 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 ZNF286BP0CG31 522 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 KRT10P13645 584 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 CA4P22748 312 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 TBXAS1P24557 533 aaPredicted RBP13.89□□□□□ -0.19
VPS4A-204ENST00000566354 RPA3P35244 121 aaPredicted RBP13.89□□□□□ -0.19
VPS4A-204ENST00000566354 GPS1Q13098 491 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 RBBP5Q15291 538 aaKnown RBP13.89□□□□□ -0.19
VPS4A-204ENST00000566354 ZFYVE27Q5T4F4 411 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 KAZNQ674X7 775 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 LMBRD2Q68DH5 695 aaPredicted RBP13.89□□□□□ -0.19
VPS4A-204ENST00000566354 SPOPLQ6IQ16 392 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 CENPUQ71F23 418 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 ARMCX6Q7L4S7 300 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 TAS1R3Q7RTX0 852 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 PLPPR4Q7Z2D5 763 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms