RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 CSTF1Q05048 431 aaKnown RBP22.12■■□□□ 1.13
CLN3-219ENST00000565778 KCNB1Q14721 858 aa22.12■■□□□ 1.13
CLN3-219ENST00000565778 MAML2Q8IZL2 1156 aaPredicted RBP22.12■■□□□ 1.13
CLN3-219ENST00000565778 USP13Q92995 863 aaPredicted RBP22.12■■□□□ 1.13
CLN3-219ENST00000565778 SPATA17Q96L03 361 aa22.12■■□□□ 1.13
CLN3-219ENST00000565778 TRPC7Q9HCX4 862 aa22.12■■□□□ 1.13
CLN3-219ENST00000565778 NME7Q9Y5B8 376 aa22.12■■□□□ 1.13
CLN3-219ENST00000565778 IKBKBO14920 756 aa22.11■■□□□ 1.13
CLN3-219ENST00000565778 VNN1O95497 513 aa22.11■■□□□ 1.13
CLN3-219ENST00000565778 RPL13P26373 211 aaKnown RBP22.11■■□□□ 1.13
CLN3-219ENST00000565778 SOX9P48436 509 aa22.11■■□□□ 1.13
CLN3-219ENST00000565778 SGSM1Q2NKQ1 1148 aa22.11■■□□□ 1.13
CLN3-219ENST00000565778 C1orf228Q6PIY5 440 aa22.11■■□□□ 1.13
CLN3-219ENST00000565778 ZC3H14Q6PJT7 736 aaKnown RBP22.11■■□□□ 1.13
CLN3-219ENST00000565778 GUF1Q8N442 669 aaKnown RBP22.11■■□□□ 1.13
CLN3-219ENST00000565778 ELMO3Q96BJ8 720 aa22.11■■□□□ 1.13
CLN3-219ENST00000565778 MSANTD3Q96H12 275 aa22.11■■□□□ 1.13
CLN3-219ENST00000565778 CYP2S1Q96SQ9 504 aa22.11■■□□□ 1.13
CLN3-219ENST00000565778 SEMA4AQ9H3S1 761 aa22.11■■□□□ 1.13
CLN3-219ENST00000565778 DPEP3Q9H4B8 488 aa22.11■■□□□ 1.13
CLN3-219ENST00000565778 VRTNQ9H8Y1 702 aa22.11■■□□□ 1.13
CLN3-219ENST00000565778 FBXO4Q9UKT5 387 aa22.11■■□□□ 1.13
CLN3-219ENST00000565778 CCL26Q9Y258 94 aa22.11■■□□□ 1.13
CLN3-219ENST00000565778 TRIM66O15016 1216 aa22.1■■□□□ 1.13
CLN3-219ENST00000565778 P4HA1P13674 534 aa22.1■■□□□ 1.13
CLN3-219ENST00000565778 NR2F2P24468 414 aa22.1■■□□□ 1.13
CLN3-219ENST00000565778 VAMP7P51809 220 aa22.1■■□□□ 1.13
CLN3-219ENST00000565778 TNK2Q07912 1038 aa22.1■■□□□ 1.13
CLN3-219ENST00000565778 ADAM9Q13443 819 aa22.1■■□□□ 1.13
CLN3-219ENST00000565778 ZACNQ401N2 412 aa22.1■■□□□ 1.13
CLN3-219ENST00000565778 CC2D1AQ6P1N0 951 aaPredicted RBP22.1■■□□□ 1.13
CLN3-219ENST00000565778 SV2AQ7L0J3 742 aa22.1■■□□□ 1.13
CLN3-219ENST00000565778 RALGPS2Q86X27 583 aaPredicted RBP22.1■■□□□ 1.13
CLN3-219ENST00000565778 ZNF687Q8N1G0 1237 aa22.1■■□□□ 1.13
CLN3-219ENST00000565778 TTC16Q8NEE8 873 aa22.1■■□□□ 1.13
CLN3-219ENST00000565778 CEP295NLQ96MC4 621 aa22.1■■□□□ 1.13
CLN3-219ENST00000565778 SMYD3Q9H7B4 428 aa22.1■■□□□ 1.13
CLN3-219ENST00000565778 KIF9Q9HAQ2 790 aa22.1■■□□□ 1.13
CLN3-219ENST00000565778 EHD2Q9NZN4 543 aa22.1■■□□□ 1.13
CLN3-219ENST00000565778 ZFHX2Q9C0A1 2572 aaPredicted RBP22.09■■□□□ 1.13
CLN3-219ENST00000565778 TRAV19A0A0A6YYK7 116 aa22.09■■□□□ 1.13
CLN3-219ENST00000565778 F8VP50 259 aa22.09■■□□□ 1.13
CLN3-219ENST00000565778 SPECC1L-ADORA2AF8WAN1 911 aa22.09■■□□□ 1.13
CLN3-219ENST00000565778 USP17L7P0C7H9 530 aa22.09■■□□□ 1.13
CLN3-219ENST00000565778 KRT13P13646 458 aa22.09■■□□□ 1.13
CLN3-219ENST00000565778 RAP1GAPP47736 663 aa22.09■■□□□ 1.13
CLN3-219ENST00000565778 MTAPQ13126 283 aa22.09■■□□□ 1.13
CLN3-219ENST00000565778 ITPRIPL2Q3MIP1 535 aa22.09■■□□□ 1.13
CLN3-219ENST00000565778 SCARA5Q6ZMJ2 495 aa22.09■■□□□ 1.13
CLN3-219ENST00000565778 DENND5BQ6ZUT9 1274 aa22.09■■□□□ 1.13
CLN3-219ENST00000565778 FMR1NBQ8N0W7 255 aaPredicted RBP22.09■■□□□ 1.13
CLN3-219ENST00000565778 B3GALNT2Q8NCR0 500 aa22.09■■□□□ 1.13
CLN3-219ENST00000565778 B3GNT5Q9BYG0 378 aa22.09■■□□□ 1.13
CLN3-219ENST00000565778 CLDN5O00501 218 aa22.08■■□□□ 1.13
CLN3-219ENST00000565778 MAPK13O15264 365 aa22.08■■□□□ 1.13
CLN3-219ENST00000565778 TADA3O75528 432 aa22.08■■□□□ 1.13
CLN3-219ENST00000565778 AKAP3O75969 853 aa22.08■■□□□ 1.13
CLN3-219ENST00000565778 CKMP06732 381 aa22.08■■□□□ 1.13
CLN3-219ENST00000565778 CHRNB1P11230 501 aa22.08■■□□□ 1.13
CLN3-219ENST00000565778 HDCP19113 662 aa22.08■■□□□ 1.13
CLN3-219ENST00000565778 CTHP32929 405 aa22.08■■□□□ 1.13
CLN3-219ENST00000565778 PNOCQ13519 176 aa22.08■■□□□ 1.13
CLN3-219ENST00000565778 NFIL3Q16649 462 aa22.08■■□□□ 1.13
CLN3-219ENST00000565778 ZNF528Q3MIS6 628 aa22.08■■□□□ 1.13
CLN3-219ENST00000565778 FAM186BQ8IYM0 893 aa22.08■■□□□ 1.13
CLN3-219ENST00000565778 ARL14EPQ8N8R7 260 aaPredicted RBP22.08■■□□□ 1.13
CLN3-219ENST00000565778 C8orf48Q96LL4 319 aa22.08■■□□□ 1.13
CLN3-219ENST00000565778 MED10Q9BTT4 135 aa22.08■■□□□ 1.13
CLN3-219ENST00000565778 ELOVL4Q9GZR5 314 aa22.08■■□□□ 1.13
CLN3-219ENST00000565778 CHRDQ9H2X0 955 aa22.08■■□□□ 1.13
CLN3-219ENST00000565778 TRPM5Q9NZQ8 1165 aa22.08■■□□□ 1.13
CLN3-219ENST00000565778 MIA3Q5JRA6 1907 aa22.08■■□□□ 1.12
CLN3-219ENST00000565778 LMNAP02545 664 aaKnown RBP22.07■■□□□ 1.12
CLN3-219ENST00000565778 PSMC2P35998 433 aaKnown RBP22.07■■□□□ 1.12
CLN3-219ENST00000565778 USP46P62068 366 aa22.07■■□□□ 1.12
CLN3-219ENST00000565778 RUNX3Q13761 415 aa22.07■■□□□ 1.12
CLN3-219ENST00000565778 ZNF268Q14587 947 aaPredicted RBP22.07■■□□□ 1.12
CLN3-219ENST00000565778 C1orf220Q5T0J3 134 aa22.07■■□□□ 1.12
CLN3-219ENST00000565778 TXNDC11Q6PKC3 985 aa22.07■■□□□ 1.12
CLN3-219ENST00000565778 TSSK4Q6SA08 328 aa22.07■■□□□ 1.12
CLN3-219ENST00000565778 INTS8Q75QN2 995 aaKnown RBP22.07■■□□□ 1.12
CLN3-219ENST00000565778 SMYD4Q8IYR2 804 aaPredicted RBP22.07■■□□□ 1.12
CLN3-219ENST00000565778 ADSSL1Q8N142 457 aa22.07■■□□□ 1.12
CLN3-219ENST00000565778 TAF4BQ92750 862 aa22.07■■□□□ 1.12
CLN3-219ENST00000565778 TNIP3Q96KP6 325 aa22.07■■□□□ 1.12
CLN3-219ENST00000565778 SLC22A12Q96S37 553 aa22.07■■□□□ 1.12
CLN3-219ENST00000565778 FAM83CQ9BQN1 747 aa22.07■■□□□ 1.12
CLN3-219ENST00000565778 ZNF518BQ9C0D4 1074 aa22.07■■□□□ 1.12
CLN3-219ENST00000565778 SDCBP2Q9H190 292 aa22.07■■□□□ 1.12
CLN3-219ENST00000565778 EBF3Q9H4W6 596 aa22.07■■□□□ 1.12
CLN3-219ENST00000565778 RMND1Q9NWS8 449 aa22.07■■□□□ 1.12
CLN3-219ENST00000565778 TICRRQ7Z2Z1 1910 aa22.06■■□□□ 1.12
CLN3-219ENST00000565778 C2orf78A6NCI8 922 aa22.06■■□□□ 1.12
CLN3-219ENST00000565778 ABL1P00519 1130 aa22.06■■□□□ 1.12
CLN3-219ENST00000565778 HLA-DRAP01903 254 aa22.06■■□□□ 1.12
CLN3-219ENST00000565778 PIK3CAP42336 1068 aa22.06■■□□□ 1.12
CLN3-219ENST00000565778 FAM160A1Q05DH4 1040 aa22.06■■□□□ 1.12
CLN3-219ENST00000565778 LRRC32Q14392 662 aa22.06■■□□□ 1.12
CLN3-219ENST00000565778 PON2Q15165 354 aa22.06■■□□□ 1.12
CLN3-219ENST00000565778 TRIM68Q6AZZ1 485 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 111.6 ms