RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 MORC2Q9Y6X9 1032 aaPredicted RBP5.58□□□□□ -1.52
LINC00560-201ENST00000564593 A0A087WZ62 844 aa5.57□□□□□ -1.52
LINC00560-201ENST00000564593 GOLGA6L3A6NEY3 463 aa5.57□□□□□ -1.52
LINC00560-201ENST00000564593 RGS10O43665 173 aa5.57□□□□□ -1.52
LINC00560-201ENST00000564593 TRIAP1O43715 76 aa5.57□□□□□ -1.52
LINC00560-201ENST00000564593 RRP9O43818 475 aaKnown RBP5.57□□□□□ -1.52
LINC00560-201ENST00000564593 CREB3O43889 395 aa5.57□□□□□ -1.52
LINC00560-201ENST00000564593 SKAP2O75563 359 aaPredicted RBP5.57□□□□□ -1.52
LINC00560-201ENST00000564593 IDEP14735 1019 aa5.57□□□□□ -1.52
LINC00560-201ENST00000564593 GABRB3P28472 473 aa5.57□□□□□ -1.52
LINC00560-201ENST00000564593 PRKAG1P54619 331 aa5.57□□□□□ -1.52
LINC00560-201ENST00000564593 MYO1EQ12965 1108 aa5.57□□□□□ -1.52
LINC00560-201ENST00000564593 BLMHQ13867 455 aa5.57□□□□□ -1.52
LINC00560-201ENST00000564593 USP39Q53GS9 565 aaKnown RBP5.57□□□□□ -1.52
LINC00560-201ENST00000564593 ARHGAP40Q5TG30 622 aa5.57□□□□□ -1.52
LINC00560-201ENST00000564593 COLGALT2Q8IYK4 626 aa5.57□□□□□ -1.52
LINC00560-201ENST00000564593 GLIS1Q8NBF1 620 aa5.57□□□□□ -1.52
LINC00560-201ENST00000564593 CPEB3Q8NE35 698 aaKnown RBP5.57□□□□□ -1.52
LINC00560-201ENST00000564593 IL17DQ8TAD2 202 aa5.57□□□□□ -1.52
LINC00560-201ENST00000564593 SNX27Q96L92 541 aa5.57□□□□□ -1.52
LINC00560-201ENST00000564593 CDK5RAP1Q96SZ6 601 aaKnown RBP5.57□□□□□ -1.52
LINC00560-201ENST00000564593 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.57□□□□□ -1.52
LINC00560-201ENST00000564593 GALNT9Q9HCQ5 603 aa5.57□□□□□ -1.52
LINC00560-201ENST00000564593 DNMT3BQ9UBC3 853 aaKnown RBP5.57□□□□□ -1.52
LINC00560-201ENST00000564593 DKK4Q9UBT3 224 aa5.57□□□□□ -1.52
LINC00560-201ENST00000564593 NDRG4Q9ULP0 352 aaKnown RBP5.57□□□□□ -1.52
LINC00560-201ENST00000564593 CAPN11Q9UMQ6 739 aa5.57□□□□□ -1.52
LINC00560-201ENST00000564593 CDY1Q9Y6F8 540 aa5.57□□□□□ -1.52
LINC00560-201ENST00000564593 A0A0B4J269 797 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 AQP7P3A6NL99 342 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 MARCH11A6NNE9 402 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 PLSCR1O15162 318 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 PIP5K1CO60331 668 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 PIAS2O75928 621 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 CDKL5O76039 1030 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 TYRP1P17643 537 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 KCNA3P22001 575 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 DDX6P26196 483 aaKnown RBP eCLIP5.56□□□□□ -1.52
LINC00560-201ENST00000564593 CD6P30203 668 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 TUBB3Q13509 450 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 E2F2Q14209 437 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 KCNAB1Q14722 419 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 RAB30Q15771 203 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 BEAN1Q3B7T3 259 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 RBM20Q5T481 1227 aaKnown RBP5.56□□□□□ -1.52
LINC00560-201ENST00000564593 SP5Q6BEB4 398 aaPredicted RBP5.56□□□□□ -1.52
LINC00560-201ENST00000564593 SFRP4Q6FHJ7 346 aaPredicted RBP5.56□□□□□ -1.52
LINC00560-201ENST00000564593 ARMC6Q6NXE6 501 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 CRTC1Q6UUV9 634 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 ZNF276Q8N554 614 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 CCT6BQ92526 530 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 DVL3Q92997 716 aaPredicted RBP5.56□□□□□ -1.52
LINC00560-201ENST00000564593 NELL2Q99435 816 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 FAM83DQ9H4H8 585 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 ZNF703Q9H7S9 590 aaPredicted RBP5.56□□□□□ -1.52
LINC00560-201ENST00000564593 CXorf36Q9H7Y0 433 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 TMEM74BQ9NUR3 256 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 RGL1Q9NZL6 768 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 CEP72Q9P209 647 aa5.56□□□□□ -1.52
LINC00560-201ENST00000564593 TRGV11A0A075B6L2 103 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 KCNQ3O43525 872 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 CSTBP04080 98 aaKnown RBP5.55□□□□□ -1.52
LINC00560-201ENST00000564593 GATA3P23771 443 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 PDIA3P30101 505 aaKnown RBP5.55□□□□□ -1.52
LINC00560-201ENST00000564593 VAV2P52735 878 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 KRTAP1-1Q07627 177 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 PFKFB4Q16877 469 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 ZNF750Q32MQ0 723 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 SPDYAQ5MJ70 313 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 VPS53Q5VIR6 699 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 RGS7BPQ6MZT1 257 aaPredicted RBP5.55□□□□□ -1.52
LINC00560-201ENST00000564593 USP17L6PQ6QN14 398 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 USP49Q70CQ1 688 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 SPARTQ8N0X7 666 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 OSBPL9Q96SU4 736 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 UNKLQ9H9P5 680 aaKnown RBP5.55□□□□□ -1.52
LINC00560-201ENST00000564593 OBP2BQ9NPH6 170 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 NECTIN3Q9NQS3 549 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 INTS13Q9NVM9 706 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 SRGAP2O75044 1071 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 LAG3P18627 525 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 PPIFP30405 207 aaKnown RBP5.55□□□□□ -1.52
LINC00560-201ENST00000564593 ATICP31939 592 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 BMPR1AP36894 532 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 SLC25A3Q00325 362 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 PTCHD3Q3KNS1 767 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 ZACNQ401N2 412 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 NRN1LQ496H8 165 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 PRR16Q569H4 304 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 ICE2Q659A1 982 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 KIAA0408Q6ZU52 694 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 SLC15A3Q8IY34 581 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 NKAPQ8N5F7 415 aaKnown RBP5.55□□□□□ -1.52
LINC00560-201ENST00000564593 MYCT1Q8N699 235 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 ATG16L2Q8NAA4 619 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 IPO4Q8TEX9 1081 aaKnown RBP5.55□□□□□ -1.52
LINC00560-201ENST00000564593 SLC25A43Q8WUT9 341 aaPredicted RBP5.55□□□□□ -1.52
LINC00560-201ENST00000564593 LTV1Q96GA3 475 aaPredicted RBP5.55□□□□□ -1.52
LINC00560-201ENST00000564593 PCDHAC1Q9H158 963 aa5.55□□□□□ -1.52
LINC00560-201ENST00000564593 GBA2Q9HCG7 927 aaPredicted RBP5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms