RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 MAGEB5Q9BZ81 275 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 CXCL16Q9H2A7 254 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 ELP3Q9H9T3 547 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 EURLQ9NYK6 297 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 LGALS13Q9UHV8 139 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 BNIP1Q12981 228 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 SPATA33Q96N06 139 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 CPSF3Q9UKF6 684 aaKnown RBP14.15□□□□□ -0.14
CLK3-215ENST00000564353 NUMBLQ9Y6R0 609 aa14.15□□□□□ -0.14
CLK3-215ENST00000564353 C3orf70A6NLC5 250 aaPredicted RBP14.14□□□□□ -0.15
CLK3-215ENST00000564353 C19orf81C9J6K1 198 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 ADM5C9JUS6 153 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 GPR25O00155 361 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 PIGRP01833 764 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 OAZ1P54368 228 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 SLC25A11Q02978 314 aaKnown RBP14.14□□□□□ -0.15
CLK3-215ENST00000564353 FAM102AQ5T9C2 384 aaPredicted RBP14.14□□□□□ -0.15
CLK3-215ENST00000564353 NAIF1Q69YI7 327 aaPredicted RBP14.14□□□□□ -0.15
CLK3-215ENST00000564353 EFCAB12Q6NXP0 572 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 PALM2Q8IXS6 379 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 UBR7Q8N806 425 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 LRRC8CQ8TDW0 803 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 HEXIM2Q96MH2 286 aaKnown RBP14.14□□□□□ -0.15
CLK3-215ENST00000564353 TXNRD2Q9NNW7 524 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 PRKAG3Q9UGI9 489 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 XPO7Q9UIA9 1087 aaKnown RBP14.14□□□□□ -0.15
CLK3-215ENST00000564353 SIX4Q9UIU6 781 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 ZNF112Q9UJU3 913 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 CNTN6Q9UQ52 1028 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 HEY1Q9Y5J3 304 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 ZBTB42B2RXF5 422 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 TNNC2P02585 160 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 VTNP04004 478 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 MIPP30301 263 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 SEPT7Q16181 437 aaKnown RBP14.14□□□□□ -0.15
CLK3-215ENST00000564353 Q3C1V9 767 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 GALNTL6Q49A17 601 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 PREPLQ4J6C6 727 aaPredicted RBP14.14□□□□□ -0.15
CLK3-215ENST00000564353 PPP1R15BQ5SWA1 713 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 PPP1R21Q6ZMI0 780 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 ZBTB8OSQ8IWT0 167 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 C1orf127Q8N9H9 656 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 P3H4Q92791 437 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 PAFAH2Q99487 392 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 RNPEPQ9H4A4 650 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 RXFP1Q9HBX9 757 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 CHKBQ9Y259 395 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 EZRP15311 586 aaKnown RBP14.14□□□□□ -0.15
CLK3-215ENST00000564353 EIF3EP60228 445 aaKnown RBP14.14□□□□□ -0.15
CLK3-215ENST00000564353 PIGHQ14442 188 aaPredicted RBP14.14□□□□□ -0.15
CLK3-215ENST00000564353 FAM160B1Q5W0V3 765 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 JADE1Q6IE81 842 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 SPATA18Q8TC71 538 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 PEBP4Q96S96 227 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 ELOVL4Q9GZR5 314 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 SPATC1LQ9H0A9 340 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 UBN1Q9NPG3 1134 aa14.14□□□□□ -0.15
CLK3-215ENST00000564353 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.14□□□□□ -0.15
CLK3-215ENST00000564353 LACTBL1A8MY62 500 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 H0Y3Z8 333 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 DIAPH2O60879 1101 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 USP2O75604 605 aaPredicted RBP14.13□□□□□ -0.15
CLK3-215ENST00000564353 ANP32DO95626 131 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 RBP3P10745 1247 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 NEFHP12036 1026 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 KDELR1P24390 212 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 GBP2P32456 591 aaPredicted RBP14.13□□□□□ -0.15
CLK3-215ENST00000564353 RAD23BP54727 409 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 LMNB2Q03252 620 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 TMEM62Q0P6H9 643 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 SPARCL1Q14515 664 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 AMHR2Q16671 573 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 ZNF667Q5HYK9 610 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 TCP10LQ8TDR4 215 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 CFAP36Q96G28 342 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 ANKRD36BP1Q96IX9 119 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 TMEM134Q9H6X4 195 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 PIH1D1Q9NWS0 290 aaKnown RBP14.13□□□□□ -0.15
CLK3-215ENST00000564353 RABGEF1Q9UJ41 708 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 IGKV6D-21A0A0A0MT36 114 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 A0A0G2JND7 137 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 ABLIM1O14639 778 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 HCRTO43612 131 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 MSH2P43246 934 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 CDH6P55285 790 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 YWHAGP61981 247 aaKnown RBP eCLIP14.13□□□□□ -0.15
CLK3-215ENST00000564353 MORF4L2Q15014 288 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 MAP1SQ66K74 1059 aaPredicted RBP14.13□□□□□ -0.15
CLK3-215ENST00000564353 LBX2Q6XYB7 198 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 NSMCE1Q8WV22 266 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 PTPRN2Q92932 1015 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 CDT1Q9H211 546 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 SNCAIPQ9Y6H5 919 aa14.13□□□□□ -0.15
CLK3-215ENST00000564353 ATP2A1O14983 1001 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 TCEA3O75764 348 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 MICAL2O94851 1124 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 UPP2O95045 317 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 GSTA1P08263 222 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 POLR2BP30876 1174 aaKnown RBP14.12□□□□□ -0.15
CLK3-215ENST00000564353 RFC5P40937 340 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms