RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 GOLGA5Q8TBA6 731 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 ZNF516Q92618 1163 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 MYLPFQ96A32 169 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 RMDN1Q96DB5 314 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 CHFRQ96EP1 664 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 HINFPQ9BQA5 517 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 SLC39A2Q9NP94 309 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 GCNT4Q9P109 453 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 NCDNQ9UBB6 729 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 CACNA1AO00555 2505 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 OTOL1A6NHN0 477 aaPredicted RBP18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 ACTN4O43707 911 aaKnown RBP18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 KLRC4O43908 158 aa18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 USP17L7P0C7H9 530 aa18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 ATICP31939 592 aa18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 CNR2P34972 360 aa18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 CYP2J2P51589 502 aa18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 AMPD2Q01433 879 aa18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 DNM1Q05193 864 aaKnown RBP18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 FOXD4L6Q3SYB3 417 aaPredicted RBP18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 FOXD4L3Q6VB84 417 aaPredicted RBP18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 Q6ZS52 159 aa18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 SCN4BQ8IWT1 228 aa18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 FSIP1Q8NA03 581 aa18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 SECISBP2LQ93073 1101 aaKnown RBP18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 CCDC127Q96BQ5 260 aa18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 PCED1BQ96HM7 432 aa18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 MRPL45Q9BRJ2 306 aaKnown RBP18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 TTLL2Q9BWV7 592 aa18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 XYLT2Q9H1B5 865 aa18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 VRTNQ9H8Y1 702 aa18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 DMAC2Q9NW81 257 aa18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 DLL3Q9NYJ7 618 aa18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 NME7Q9Y5B8 376 aa18.4■□□□□ 0.54
VPS9D1-203ENST00000563798 TRAV19A0A0A6YYK7 116 aa18.39■□□□□ 0.53
VPS9D1-203ENST00000563798 TGM1P22735 817 aa18.39■□□□□ 0.53
VPS9D1-203ENST00000563798 GNL1P36915 607 aaPredicted RBP18.39■□□□□ 0.53
VPS9D1-203ENST00000563798 AFMP43652 599 aa18.39■□□□□ 0.53
VPS9D1-203ENST00000563798 AP3M2P53677 418 aa18.39■□□□□ 0.53
VPS9D1-203ENST00000563798 PSMC1P62191 440 aaKnown RBP18.39■□□□□ 0.53
VPS9D1-203ENST00000563798 USP4Q13107 963 aa18.39■□□□□ 0.53
VPS9D1-203ENST00000563798 PSMD2Q13200 908 aa18.39■□□□□ 0.53
VPS9D1-203ENST00000563798 ZNF77Q15935 545 aa18.39■□□□□ 0.53
VPS9D1-203ENST00000563798 CC2D1AQ6P1N0 951 aaPredicted RBP18.39■□□□□ 0.53
VPS9D1-203ENST00000563798 LONP2Q86WA8 852 aa18.39■□□□□ 0.53
VPS9D1-203ENST00000563798 SLC9A9Q8IVB4 645 aa18.39■□□□□ 0.53
VPS9D1-203ENST00000563798 CEP57L1Q8IYX8 460 aa18.39■□□□□ 0.53
VPS9D1-203ENST00000563798 KIAA1958Q8N8K9 716 aa18.39■□□□□ 0.53
VPS9D1-203ENST00000563798 C8orf48Q96LL4 319 aa18.39■□□□□ 0.53
VPS9D1-203ENST00000563798 SLC22A12Q96S37 553 aa18.39■□□□□ 0.53
VPS9D1-203ENST00000563798 MMS19Q96T76 1030 aa18.39■□□□□ 0.53
VPS9D1-203ENST00000563798 EBF3Q9H4W6 596 aa18.39■□□□□ 0.53
VPS9D1-203ENST00000563798 EHD2Q9NZN4 543 aa18.39■□□□□ 0.53
VPS9D1-203ENST00000563798 USP25Q9UHP3 1055 aa18.39■□□□□ 0.53
VPS9D1-203ENST00000563798 SERTAD1Q9UHV2 236 aa18.39■□□□□ 0.53
VPS9D1-203ENST00000563798 TRIM66O15016 1216 aa18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 EXOC3O60645 756 aa18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 MYL1P05976 194 aa18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 PDGFRBP09619 1106 aa18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 BDNFP23560 247 aa18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 CMA1P23946 247 aa18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 PDE6CP51160 858 aa18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 NOP14P78316 857 aaKnown RBP18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 STK4Q13043 487 aa18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 PUM1Q14671 1186 aaKnown RBP eCLIP18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 MTF1Q14872 753 aa18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 WDR72Q3MJ13 1102 aa18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 TRIM68Q6AZZ1 485 aa18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 LAIR1Q6GTX8 287 aa18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 FSTL4Q6MZW2 842 aa18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 DENND5BQ6ZUT9 1274 aa18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 OSCP1Q8WVF1 389 aa18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 SYAP1Q96A49 352 aaPredicted RBP18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 PAGE5Q96GU1 130 aa18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 CYP2S1Q96SQ9 504 aa18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 SNX25Q9H3E2 840 aa18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 ARHGAP26Q9UNA1 814 aa18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 HPSEQ9Y251 543 aa18.38■□□□□ 0.53
VPS9D1-203ENST00000563798 GREB1Q4ZG55 1949 aa18.37■□□□□ 0.53
VPS9D1-203ENST00000563798 CHURC1-FNTBB4DL54 471 aa18.37■□□□□ 0.53
VPS9D1-203ENST00000563798 ARSAP15289 507 aa18.37■□□□□ 0.53
VPS9D1-203ENST00000563798 GRIK1P39086 918 aa18.37■□□□□ 0.53
VPS9D1-203ENST00000563798 PPP3CCP48454 512 aa18.37■□□□□ 0.53
VPS9D1-203ENST00000563798 MYL6P60660 151 aa18.37■□□□□ 0.53
VPS9D1-203ENST00000563798 TNNC1P63316 161 aa18.37■□□□□ 0.53
VPS9D1-203ENST00000563798 GRSF1Q12849 480 aaKnown RBP eCLIP18.37■□□□□ 0.53
VPS9D1-203ENST00000563798 GRAMD1CQ8IYS0 662 aa18.37■□□□□ 0.53
VPS9D1-203ENST00000563798 KIAA0895Q8NCT3 520 aa18.37■□□□□ 0.53
VPS9D1-203ENST00000563798 PLEKHO2Q8TD55 490 aa18.37■□□□□ 0.53
VPS9D1-203ENST00000563798 PARD3BQ8TEW8 1205 aa18.37■□□□□ 0.53
VPS9D1-203ENST00000563798 C2orf42Q9NWW7 574 aa18.37■□□□□ 0.53
VPS9D1-203ENST00000563798 PTPRDP23468 1912 aa18.37■□□□□ 0.53
VPS9D1-203ENST00000563798 CCDC163A0A0D9SF12 145 aa18.36■□□□□ 0.53
VPS9D1-203ENST00000563798 FAM237AA0A1B0GTK4 181 aa18.36■□□□□ 0.53
VPS9D1-203ENST00000563798 C2orf78A6NCI8 922 aa18.36■□□□□ 0.53
VPS9D1-203ENST00000563798 HRO43593 1189 aa18.36■□□□□ 0.53
VPS9D1-203ENST00000563798 ATG13O75143 517 aa18.36■□□□□ 0.53
VPS9D1-203ENST00000563798 CKMP06732 381 aa18.36■□□□□ 0.53
VPS9D1-203ENST00000563798 PTPN1P18031 435 aaKnown RBP18.36■□□□□ 0.53
VPS9D1-203ENST00000563798 HDCP19113 662 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 265.7 ms