RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 CFAP221Q4G0U5 840 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 FKBP15Q5T1M5 1219 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 LIN9Q5TKA1 542 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 E4F1Q66K89 784 aaPredicted RBP10.4□□□□□ -0.74
CLK3-208ENST00000562626 GPRIN1Q7Z2K8 1008 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 GRASPQ7Z6J2 395 aaPredicted RBP10.4□□□□□ -0.74
CLK3-208ENST00000562626 TTC30AQ86WT1 665 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 TMC8Q8IU68 726 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 CMASQ8NFW8 434 aaPredicted RBP10.4□□□□□ -0.74
CLK3-208ENST00000562626 SPPL2BQ8TCT7 592 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 SMG7Q92540 1137 aaKnown RBP10.4□□□□□ -0.74
CLK3-208ENST00000562626 TCEAL4Q96EI5 215 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 ADAM7Q9H2U9 754 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 POMKQ9H5K3 350 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 NLRC4Q9NPP4 1024 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 KRT82Q9NSB4 513 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 THEGQ9P2T0 379 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 COL4A3Q01955 1670 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 FAM170AA1A519 330 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 HHLA1C9JL84 531 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 F8VZ95 297 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 O00370 1275 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 CYP26A1O43174 497 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 KRT5P13647 590 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 CD19P15391 556 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 HMGA1P17096 107 aaKnown RBP10.39□□□□□ -0.75
CLK3-208ENST00000562626 GJA1P17302 382 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 HOXB8P17481 243 aaPredicted RBP10.39□□□□□ -0.75
CLK3-208ENST00000562626 SP100P23497 879 aaPredicted RBP10.39□□□□□ -0.75
CLK3-208ENST00000562626 HOXA9P31269 272 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 ELF1P32519 619 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 UBASH3AP57075 661 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 POLR2FP61218 127 aaKnown RBP10.39□□□□□ -0.75
CLK3-208ENST00000562626 SMAD4Q13485 552 aaKnown RBP10.39□□□□□ -0.75
CLK3-208ENST00000562626 RAPGEF1Q13905 1077 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 UVSSAQ2YD98 709 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 TJAP1Q5JTD0 557 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 PRSS36Q5K4E3 855 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 ARHGAP17Q68EM7 881 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 PTCRAQ6ISU1 281 aaPredicted RBP10.39□□□□□ -0.75
CLK3-208ENST00000562626 CLEC20AQ6ZU45 233 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 CCDC149Q6ZUS6 474 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 TMEM150AQ86TG1 271 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 SCN4BQ8IWT1 228 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 ANKRD20A12PQ8NF67 263 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 ST13P5Q8NFI4 369 aaPredicted RBP10.39□□□□□ -0.75
CLK3-208ENST00000562626 OLIG1Q8TAK6 271 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 C2orf15Q8WU43 125 aaKnown RBP10.39□□□□□ -0.75
CLK3-208ENST00000562626 JAKMIP2Q96AA8 810 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 CYFIP2Q96F07 1278 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 FUBP3Q96I24 572 aaKnown RBP eCLIP10.39□□□□□ -0.75
CLK3-208ENST00000562626 TNIP3Q96KP6 325 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 HEXIM2Q96MH2 286 aaKnown RBP10.39□□□□□ -0.75
CLK3-208ENST00000562626 HNRNPABQ99729 332 aaKnown RBP10.39□□□□□ -0.75
CLK3-208ENST00000562626 MED10Q9BTT4 135 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 TTYH3Q9C0H2 523 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 IL21Q9HBE4 155 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 ABCB6Q9NP58 842 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 ZDHHC7Q9NXF8 308 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 COG5Q9UP83 839 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 HCN4Q9Y3Q4 1203 aa10.39□□□□□ -0.75
CLK3-208ENST00000562626 FSD2A1L4K1 749 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 SPDYE4A6NLX3 237 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 SLC38A8A6NNN8 435 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 TNFRSF10BO14763 440 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 TADA3O75528 432 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 AP1G2O75843 785 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 LRG1P02750 347 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 HNRNPA1P09651 372 aaKnown RBP eCLIP10.38□□□□□ -0.75
CLK3-208ENST00000562626 SRGAP2BP0DMP2 458 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 USP8P40818 1118 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 MAGEA11P43364 429 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 PGFP49763 221 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 MFAP3P55082 362 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 PLD1Q13393 1074 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 SMAD2Q15796 467 aaKnown RBP10.38□□□□□ -0.75
CLK3-208ENST00000562626 GOLGA7BQ2TAP0 167 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 PKDCCQ504Y2 493 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 STXBP5Q5T5C0 1151 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 DENND1BQ6P3S1 775 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 C4orf50Q6ZRC1 276 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 DNAJB7Q7Z6W7 309 aaPredicted RBP10.38□□□□□ -0.75
CLK3-208ENST00000562626 SLC47A2Q86VL8 602 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 FAM71AQ8IYT1 594 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 ITFG1Q8TB96 612 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 UBA3Q8TBC4 463 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 SLC20A1Q8WUM9 679 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 ING5Q8WYH8 240 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 BAP1Q92560 729 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 SMARCD1Q96GM5 515 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 PCMTD1Q96MG8 357 aaPredicted RBP10.38□□□□□ -0.75
CLK3-208ENST00000562626 NECAB3Q96P71 396 aaPredicted RBP10.38□□□□□ -0.75
CLK3-208ENST00000562626 CORO1BQ9BR76 489 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 CSNK1G1Q9HCP0 422 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 HSFX1Q9UBD0 423 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 CYTH4Q9UIA0 394 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 TSPAN16Q9UKR8 245 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 MAFFQ9ULX9 164 aa10.38□□□□□ -0.75
CLK3-208ENST00000562626 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.38□□□□□ -0.75
CLK3-208ENST00000562626 MUC3AQ02505 3323 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms