RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 FAIMQ9NVQ4 179 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 MAP3K20Q9NYL2 800 aaKnown RBP13.93□□□□□ -0.18
CLK3-206ENST00000562078 GCNT4Q9P109 453 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 A8MXQ7 604 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.93□□□□□ -0.18
CLK3-206ENST00000562078 K7ENM7 598 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 THAP12O43422 761 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 CETN2P41208 172 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 HALP42357 657 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 QARSP47897 775 aaKnown RBP13.93□□□□□ -0.18
CLK3-206ENST00000562078 DLG1Q12959 904 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 BAATQ14032 418 aaPredicted RBP13.93□□□□□ -0.18
CLK3-206ENST00000562078 PDK4Q16654 411 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 DPY19L2P1Q6NXN4 242 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 ZBED8Q8IZ13 594 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 ANKRD35Q8N283 1001 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 OR6Y1Q8NGX8 325 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 EPB41L1Q9H4G0 881 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 AGPAT3Q9NRZ7 376 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 HEY2Q9UBP5 337 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 BUD23O43709 281 aaKnown RBP13.92□□□□□ -0.18
CLK3-206ENST00000562078 CTNNA2P26232 953 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 PSMC2P35998 433 aaKnown RBP13.92□□□□□ -0.18
CLK3-206ENST00000562078 RARRES1P49788 294 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 SERPINB8P50452 374 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 PPIL2Q13356 520 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 SPARCL1Q14515 664 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 LLGL1Q15334 1064 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 SFT2D3Q587I9 215 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 RIPOR1Q6ZS17 1223 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 DEPTORQ8TB45 409 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 LNX1Q8TBB1 728 aaPredicted RBP13.92□□□□□ -0.18
CLK3-206ENST00000562078 DENND1AQ8TEH3 1009 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 ARHGEF26Q96DR7 871 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 CLPTM1LQ96KA5 538 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 NACA2Q9H009 215 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 NMRK2Q9NPI5 230 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 TIMMDC1Q9NPL8 285 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 HOXC10Q9NYD6 342 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 UBAP1Q9NZ09 502 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 TCEAL9Q9UHQ7 104 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 LGALS13Q9UHV8 139 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 A0A0G2JLL6 359 aaPredicted RBP13.92□□□□□ -0.18
CLK3-206ENST00000562078 A0A0G2JND7 137 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 CDH16O75309 829 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 SMIM18P0DKX4 95 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 RPA3P35244 121 aaPredicted RBP13.92□□□□□ -0.18
CLK3-206ENST00000562078 GEMIN4P57678 1058 aaKnown RBP13.92□□□□□ -0.18
CLK3-206ENST00000562078 COG7P83436 770 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 HNRNPDQ14103 355 aaKnown RBP13.92□□□□□ -0.18
CLK3-206ENST00000562078 GJB7Q6PEY0 223 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 CYFIP1Q7L576 1253 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 PRRT2Q7Z6L0 340 aaPredicted RBP13.92□□□□□ -0.18
CLK3-206ENST00000562078 PDSS2Q86YH6 399 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 SLC25A41Q8N5S1 370 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 METTL25Q8N6Q8 603 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 REPS2Q8NFH8 660 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 FBXO27Q8NI29 283 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 PANX3Q96QZ0 392 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 TBC1D22BQ9NU19 505 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 NDUFA13Q9P0J0 144 aa13.92□□□□□ -0.18
CLK3-206ENST00000562078 CXCL11O14625 94 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 P4HA2O15460 535 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 ATMINO43313 823 aaPredicted RBP13.91□□□□□ -0.18
CLK3-206ENST00000562078 CCNE2O96020 404 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 COILP38432 576 aaPredicted RBP13.91□□□□□ -0.18
CLK3-206ENST00000562078 SLC1A5Q15758 541 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 NFIL3Q16649 462 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 RGS9BPQ6ZS82 235 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 GLYCTKQ8IVS8 523 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 C4orf33Q8N1A6 199 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 SAMD3Q8N6K7 520 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 ZFP28Q8NHY6 868 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 RFFLQ8WZ73 363 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 SLC10A4Q96EP9 437 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 NINJ2Q9NZG7 142 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 COG5Q9UP83 839 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 MYPNQ86TC9 1320 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 NDUFB5O43674 189 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 ALDH2P05091 517 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 PIM1P11309 404 aaPredicted RBP13.91□□□□□ -0.18
CLK3-206ENST00000562078 YWHABP31946 246 aaKnown RBP13.91□□□□□ -0.18
CLK3-206ENST00000562078 PRKCIP41743 596 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 PSMD7P51665 324 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 AQP4P55087 323 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 MSLNQ13421 630 aaPredicted RBP13.91□□□□□ -0.18
CLK3-206ENST00000562078 TMEM132BQ14DG7 1078 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 NADK2Q4G0N4 442 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 VPS36Q86VN1 386 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 LRRC6Q86X45 466 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 DQX1Q8TE96 717 aaKnown RBP13.91□□□□□ -0.18
CLK3-206ENST00000562078 SIX2Q9NPC8 291 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 ZNF214Q9UL59 606 aaPredicted RBP13.91□□□□□ -0.18
CLK3-206ENST00000562078 TMED5Q9Y3A6 229 aa13.91□□□□□ -0.18
CLK3-206ENST00000562078 HEMK1Q9Y5R4 338 aaPredicted RBP13.91□□□□□ -0.18
CLK3-206ENST00000562078 KANSL1LA0AUZ9 987 aa13.9□□□□□ -0.18
CLK3-206ENST00000562078 SERPINB7O75635 380 aa13.9□□□□□ -0.18
CLK3-206ENST00000562078 TFAP2AP05549 437 aa13.9□□□□□ -0.18
CLK3-206ENST00000562078 TRIM49P0CI25 452 aa13.9□□□□□ -0.18
CLK3-206ENST00000562078 TRIM49CP0CI26 452 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 146.7 ms