RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 SUSD3Q96L08 255 aa22.43■■□□□ 1.18
CLN3-209ENST00000561689 SLC4A5Q9BY07 1137 aa22.43■■□□□ 1.18
CLN3-209ENST00000561689 CARD9Q9H257 536 aa22.43■■□□□ 1.18
CLN3-209ENST00000561689 PRDM5Q9NQX1 630 aaPredicted RBP22.43■■□□□ 1.18
CLN3-209ENST00000561689 HCSTQ9UBK5 93 aa22.43■■□□□ 1.18
CLN3-209ENST00000561689 CCDC66A2RUB6 948 aa22.43■■□□□ 1.18
CLN3-209ENST00000561689 CTNNA2P26232 953 aa22.43■■□□□ 1.18
CLN3-209ENST00000561689 GSCP56915 257 aaPredicted RBP22.43■■□□□ 1.18
CLN3-209ENST00000561689 FAM102AQ5T9C2 384 aaPredicted RBP22.43■■□□□ 1.18
CLN3-209ENST00000561689 AADACL2Q6P093 401 aa22.43■■□□□ 1.18
CLN3-209ENST00000561689 PAQR9Q6ZVX9 377 aa22.43■■□□□ 1.18
CLN3-209ENST00000561689 NECAB2Q7Z6G3 386 aa22.43■■□□□ 1.18
CLN3-209ENST00000561689 EMC1Q8N766 993 aa22.43■■□□□ 1.18
CLN3-209ENST00000561689 ACTRT1Q8TDG2 376 aa22.43■■□□□ 1.18
CLN3-209ENST00000561689 PIWIL1Q96J94 861 aaKnown RBP22.43■■□□□ 1.18
CLN3-209ENST00000561689 MED10Q9BTT4 135 aa22.43■■□□□ 1.18
CLN3-209ENST00000561689 RNF216Q9NWF9 866 aaPredicted RBP22.43■■□□□ 1.18
CLN3-209ENST00000561689 TDRD15B5MCY1 1934 aaKnown RBP22.43■■□□□ 1.18
CLN3-209ENST00000561689 F8VP50 259 aa22.42■■□□□ 1.18
CLN3-209ENST00000561689 CYP11A1P05108 521 aa22.42■■□□□ 1.18
CLN3-209ENST00000561689 RHOXF2BP0C7M4 288 aa22.42■■□□□ 1.18
CLN3-209ENST00000561689 ITGB8P26012 769 aa22.42■■□□□ 1.18
CLN3-209ENST00000561689 SSR1P43307 286 aaKnown RBP22.42■■□□□ 1.18
CLN3-209ENST00000561689 TMEM110Q86TL2 294 aa22.42■■□□□ 1.18
CLN3-209ENST00000561689 SCUBE3Q8IX30 993 aa22.42■■□□□ 1.18
CLN3-209ENST00000561689 RASGEF1CQ8N431 466 aa22.42■■□□□ 1.18
CLN3-209ENST00000561689 STK32AQ8WU08 396 aa22.42■■□□□ 1.18
CLN3-209ENST00000561689 RNPC3Q96LT9 517 aaKnown RBP22.42■■□□□ 1.18
CLN3-209ENST00000561689 RHOXF2Q9BQY4 288 aa22.42■■□□□ 1.18
CLN3-209ENST00000561689 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.42■■□□□ 1.183e-6■□□□□ 10.1
CLN3-209ENST00000561689 B3GNT5Q9BYG0 378 aa22.42■■□□□ 1.18
CLN3-209ENST00000561689 NRDE2Q9H7Z3 1164 aa22.42■■□□□ 1.18
CLN3-209ENST00000561689 RBM12Q9NTZ6 932 aaKnown RBP22.42■■□□□ 1.18
CLN3-209ENST00000561689 DSEQ9UL01 958 aa22.42■■□□□ 1.18
CLN3-209ENST00000561689 CDH9Q9ULB4 789 aa22.42■■□□□ 1.18
CLN3-209ENST00000561689 PGRMC1O00264 195 aaKnown RBP22.41■■□□□ 1.18
CLN3-209ENST00000561689 UPP2O95045 317 aa22.41■■□□□ 1.18
CLN3-209ENST00000561689 PAX3P23760 479 aa22.41■■□□□ 1.18
CLN3-209ENST00000561689 FAM43BQ6ZT52 329 aaPredicted RBP22.41■■□□□ 1.18
CLN3-209ENST00000561689 NPAS4Q8IUM7 802 aa22.41■■□□□ 1.18
CLN3-209ENST00000561689 MIS12Q9H081 205 aa22.41■■□□□ 1.18
CLN3-209ENST00000561689 TRIM43BA6NCK2 446 aa22.41■■□□□ 1.18
CLN3-209ENST00000561689 TBKBP1A7MCY6 615 aa22.41■■□□□ 1.18
CLN3-209ENST00000561689 PYGMP11217 842 aa22.41■■□□□ 1.18
CLN3-209ENST00000561689 PCSK1P29120 753 aa22.41■■□□□ 1.18
CLN3-209ENST00000561689 TAS2R40P59535 323 aa22.41■■□□□ 1.18
CLN3-209ENST00000561689 IKBKEQ14164 716 aa22.41■■□□□ 1.18
CLN3-209ENST00000561689 OVOS1Q6IE37 1185 aa22.41■■□□□ 1.18
CLN3-209ENST00000561689 TRIM43Q96BQ3 446 aaPredicted RBP22.41■■□□□ 1.18
CLN3-209ENST00000561689 PCED1BQ96HM7 432 aa22.41■■□□□ 1.18
CLN3-209ENST00000561689 DUSP16Q9BY84 665 aa22.41■■□□□ 1.18
CLN3-209ENST00000561689 TANC1Q9C0D5 1861 aa22.4■■□□□ 1.18
CLN3-209ENST00000561689 GRAP2O75791 330 aa22.4■■□□□ 1.18
CLN3-209ENST00000561689 BEST1O76090 585 aa22.4■■□□□ 1.18
CLN3-209ENST00000561689 FGGP02679 453 aa22.4■■□□□ 1.18
CLN3-209ENST00000561689 MAN1A1P33908 653 aa22.4■■□□□ 1.18
CLN3-209ENST00000561689 RWDD2BP57060 319 aa22.4■■□□□ 1.18
CLN3-209ENST00000561689 AP1M1Q9BXS5 423 aa22.4■■□□□ 1.18
CLN3-209ENST00000561689 NRP1O14786 923 aa22.39■■□□□ 1.18
CLN3-209ENST00000561689 PAPSS1O43252 624 aaPredicted RBP22.39■■□□□ 1.18
CLN3-209ENST00000561689 HOXA2O43364 376 aa22.39■■□□□ 1.18
CLN3-209ENST00000561689 TADA2AO75478 443 aa22.39■■□□□ 1.18
CLN3-209ENST00000561689 LCP1P13796 627 aa22.39■■□□□ 1.18
CLN3-209ENST00000561689 TCF4P15884 667 aa22.39■■□□□ 1.18
CLN3-209ENST00000561689 PSMA2P25787 234 aa22.39■■□□□ 1.18
CLN3-209ENST00000561689 BCAR1P56945 870 aa22.39■■□□□ 1.18
CLN3-209ENST00000561689 ITIH3Q06033 890 aa22.39■■□□□ 1.18
CLN3-209ENST00000561689 TAF5Q15542 800 aa22.39■■□□□ 1.18
CLN3-209ENST00000561689 CNKSR3Q6P9H4 555 aa22.39■■□□□ 1.18
CLN3-209ENST00000561689 OLFML1Q6UWY5 402 aa22.39■■□□□ 1.18
CLN3-209ENST00000561689 OR10T2Q8NGX3 314 aa22.39■■□□□ 1.18
CLN3-209ENST00000561689 MYCBPAPQ8TBZ2 947 aa22.39■■□□□ 1.18
CLN3-209ENST00000561689 UBE2Q2Q8WVN8 375 aa22.39■■□□□ 1.18
CLN3-209ENST00000561689 TMEM209Q96SK2 561 aa22.39■■□□□ 1.18
CLN3-209ENST00000561689 ACBD6Q9BR61 282 aa22.39■■□□□ 1.18
CLN3-209ENST00000561689 KRT82Q9NSB4 513 aa22.39■■□□□ 1.18
CLN3-209ENST00000561689 PCDHB8Q9UN66 801 aa22.39■■□□□ 1.18
CLN3-209ENST00000561689 TMEM189-UBE2V1I3L0A0 370 aa22.39■■□□□ 1.17
CLN3-209ENST00000561689 NPR3P17342 541 aa22.39■■□□□ 1.17
CLN3-209ENST00000561689 GJC1P36383 396 aa22.39■■□□□ 1.17
CLN3-209ENST00000561689 PLA2G4AP47712 749 aa22.39■■□□□ 1.17
CLN3-209ENST00000561689 SLC8A3P57103 927 aa22.39■■□□□ 1.17
CLN3-209ENST00000561689 TUBB4BP68371 445 aa22.39■■□□□ 1.17
CLN3-209ENST00000561689 PLCB3Q01970 1234 aa22.39■■□□□ 1.17
CLN3-209ENST00000561689 PIGHQ14442 188 aaPredicted RBP22.39■■□□□ 1.17
CLN3-209ENST00000561689 CC2D1AQ6P1N0 951 aaPredicted RBP22.39■■□□□ 1.17
CLN3-209ENST00000561689 ADAT2Q7Z6V5 191 aaKnown RBP22.39■■□□□ 1.17
CLN3-209ENST00000561689 PIGZQ86VD9 579 aa22.39■■□□□ 1.17
CLN3-209ENST00000561689 GPR161Q8N6U8 529 aaKnown RBP22.39■■□□□ 1.17
CLN3-209ENST00000561689 ANKZF1Q9H8Y5 726 aa22.39■■□□□ 1.17
CLN3-209ENST00000561689 XPO1O14980 1071 aaKnown RBP22.38■■□□□ 1.17
CLN3-209ENST00000561689 TIMP1P01033 207 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 CSF2RAP15509 400 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 TYMPP19971 482 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 RABGGTBP53611 331 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 MRPS25P82663 173 aaKnown RBP22.38■■□□□ 1.17
CLN3-209ENST00000561689 YWHAHQ04917 246 aaPredicted RBP22.38■■□□□ 1.17
CLN3-209ENST00000561689 LONRF2Q1L5Z9 754 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 CLEC20AQ6ZU45 233 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 FAM35AQ86V20 835 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms