RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 RASSF8Q8NHQ8 419 aa17.62■□□□□ 0.41
CLN3-208ENST00000561505 KBTBD7Q8WVZ9 684 aa17.62■□□□□ 0.41
CLN3-208ENST00000561505 ACDQ96AP0 544 aa17.62■□□□□ 0.41
CLN3-208ENST00000561505 SAAL1Q96ER3 474 aa17.62■□□□□ 0.41
CLN3-208ENST00000561505 CBWD1Q9BRT8 395 aa17.62■□□□□ 0.41
CLN3-208ENST00000561505 TTLL2Q9BWV7 592 aa17.62■□□□□ 0.41
CLN3-208ENST00000561505 PDE11AQ9HCR9 933 aa17.62■□□□□ 0.41
CLN3-208ENST00000561505 ANGPTL2Q9UKU9 493 aa17.62■□□□□ 0.41
CLN3-208ENST00000561505 KIAA1549LQ6ZVL6 1849 aa17.62■□□□□ 0.41
CLN3-208ENST00000561505 LAMA1P25391 3075 aa17.62■□□□□ 0.41
CLN3-208ENST00000561505 ZNF638Q14966 1978 aaKnown RBP17.61■□□□□ 0.41
CLN3-208ENST00000561505 TRAV19A0A0A6YYK7 116 aa17.61■□□□□ 0.41
CLN3-208ENST00000561505 APBB3O95704 486 aa17.61■□□□□ 0.41
CLN3-208ENST00000561505 OLFM2O95897 454 aa17.61■□□□□ 0.41
CLN3-208ENST00000561505 FAM163BP0C2L3 166 aa17.61■□□□□ 0.41
CLN3-208ENST00000561505 ACAT1P24752 427 aaKnown RBP17.61■□□□□ 0.41
CLN3-208ENST00000561505 DMC1Q14565 340 aa17.61■□□□□ 0.41
CLN3-208ENST00000561505 CCDC6Q16204 474 aa17.61■□□□□ 0.41
CLN3-208ENST00000561505 RRAGBQ5VZM2 374 aa17.61■□□□□ 0.41
CLN3-208ENST00000561505 ADGRF2Q8IZF7 708 aa17.61■□□□□ 0.41
CLN3-208ENST00000561505 RPLP0P6Q8NHW5 317 aa17.61■□□□□ 0.41
CLN3-208ENST00000561505 CCDC26Q8TAB7 109 aa17.61■□□□□ 0.41
CLN3-208ENST00000561505 FGFBP2Q9BYJ0 223 aa17.61■□□□□ 0.41
CLN3-208ENST00000561505 LINC00597Q9H2U6 94 aa17.61■□□□□ 0.41
CLN3-208ENST00000561505 INTS13Q9NVM9 706 aa17.61■□□□□ 0.41
CLN3-208ENST00000561505 SNX9Q9Y5X1 595 aa17.61■□□□□ 0.41
CLN3-208ENST00000561505 ZFHX4Q86UP3 3567 aa17.61■□□□□ 0.41
CLN3-208ENST00000561505 A0A0A0MRY4 1105 aa17.6■□□□□ 0.41
CLN3-208ENST00000561505 C2orf78A6NCI8 922 aa17.6■□□□□ 0.41
CLN3-208ENST00000561505 K7EQS6 105 aa17.6■□□□□ 0.41
CLN3-208ENST00000561505 HCRTO43612 131 aa17.6■□□□□ 0.41
CLN3-208ENST00000561505 RHOBTB1O94844 696 aa17.6■□□□□ 0.41
CLN3-208ENST00000561505 KCNK5O95279 499 aa17.6■□□□□ 0.41
CLN3-208ENST00000561505 GCNT3O95395 438 aa17.6■□□□□ 0.41
CLN3-208ENST00000561505 OPRD1P41143 372 aa17.6■□□□□ 0.41
CLN3-208ENST00000561505 SPATA2LQ8IUW3 424 aaPredicted RBP17.6■□□□□ 0.41
CLN3-208ENST00000561505 ARL14EPQ8N8R7 260 aaPredicted RBP17.6■□□□□ 0.41
CLN3-208ENST00000561505 FSIP1Q8NA03 581 aa17.6■□□□□ 0.41
CLN3-208ENST00000561505 SH3RF2Q8TEC5 729 aa17.6■□□□□ 0.41
CLN3-208ENST00000561505 USP33Q8TEY7 942 aa17.6■□□□□ 0.41
CLN3-208ENST00000561505 FAM84AQ96KN4 292 aa17.6■□□□□ 0.41
CLN3-208ENST00000561505 HHIPQ96QV1 700 aa17.6■□□□□ 0.41
CLN3-208ENST00000561505 CRTAC1Q9NQ79 661 aa17.6■□□□□ 0.41
CLN3-208ENST00000561505 CDH9Q9ULB4 789 aa17.6■□□□□ 0.41
CLN3-208ENST00000561505 WNT6Q9Y6F9 365 aa17.6■□□□□ 0.41
CLN3-208ENST00000561505 MYO16Q9Y6X6 1858 aa17.6■□□□□ 0.41
CLN3-208ENST00000561505 ATG2BQ96BY7 2078 aa17.6■□□□□ 0.41
CLN3-208ENST00000561505 PTPRJQ12913 1337 aa17.59■□□□□ 0.41
CLN3-208ENST00000561505 A0A087X0B3 334 aa17.59■□□□□ 0.41
CLN3-208ENST00000561505 ATP2C2O75185 946 aa17.59■□□□□ 0.41
CLN3-208ENST00000561505 CKMP06732 381 aa17.59■□□□□ 0.41
CLN3-208ENST00000561505 HDCP19113 662 aa17.59■□□□□ 0.41
CLN3-208ENST00000561505 WARSP23381 471 aaKnown RBP17.59■□□□□ 0.41
CLN3-208ENST00000561505 LMO2P25791 158 aa17.59■□□□□ 0.41
CLN3-208ENST00000561505 IFNAR2P48551 515 aa17.59■□□□□ 0.41
CLN3-208ENST00000561505 PDE6CP51160 858 aa17.59■□□□□ 0.41
CLN3-208ENST00000561505 SLC7A9P82251 487 aa17.59■□□□□ 0.41
CLN3-208ENST00000561505 NR1H3Q13133 447 aa17.59■□□□□ 0.41
CLN3-208ENST00000561505 C4orf50Q6ZRC1 276 aa17.59■□□□□ 0.41
CLN3-208ENST00000561505 C11orf74Q86VG3 221 aa17.59■□□□□ 0.41
CLN3-208ENST00000561505 ADGRG2Q8IZP9 1017 aa17.59■□□□□ 0.41
CLN3-208ENST00000561505 GPD1LQ8N335 351 aa17.59■□□□□ 0.41
CLN3-208ENST00000561505 CLIC6Q96NY7 704 aa17.59■□□□□ 0.41
CLN3-208ENST00000561505 MTMR12Q9C0I1 747 aa17.59■□□□□ 0.41
CLN3-208ENST00000561505 TBC1D7Q9P0N9 293 aa17.59■□□□□ 0.41
CLN3-208ENST00000561505 WASF3Q9UPY6 502 aa17.59■□□□□ 0.41
CLN3-208ENST00000561505 GOLGA8IPA6NC78 632 aa17.58■□□□□ 0.4
CLN3-208ENST00000561505 GOLGA8JA6NMD2 632 aa17.58■□□□□ 0.4
CLN3-208ENST00000561505 HOXD13P35453 343 aa17.58■□□□□ 0.4
CLN3-208ENST00000561505 PPP3CCP48454 512 aa17.58■□□□□ 0.4
CLN3-208ENST00000561505 NOP14P78316 857 aaKnown RBP17.58■□□□□ 0.4
CLN3-208ENST00000561505 RESTQ13127 1097 aa17.58■□□□□ 0.4
CLN3-208ENST00000561505 SURF1Q15526 300 aa17.58■□□□□ 0.4
CLN3-208ENST00000561505 MAPRE1Q15691 268 aaKnown RBP17.58■□□□□ 0.4
CLN3-208ENST00000561505 ELF2Q15723 593 aa17.58■□□□□ 0.4
CLN3-208ENST00000561505 PMS2CLQ68D20 193 aa17.58■□□□□ 0.4
CLN3-208ENST00000561505 CCDC73Q6ZRK6 1079 aa17.58■□□□□ 0.4
CLN3-208ENST00000561505 OR5B17Q8NGF7 314 aa17.58■□□□□ 0.4
CLN3-208ENST00000561505 OLIG1Q8TAK6 271 aa17.58■□□□□ 0.4
CLN3-208ENST00000561505 SYT15Q9BQS2 421 aa17.58■□□□□ 0.4
CLN3-208ENST00000561505 SMOC1Q9H4F8 434 aa17.58■□□□□ 0.4
CLN3-208ENST00000561505 MAGEC2Q9UBF1 373 aaPredicted RBP17.58■□□□□ 0.4
CLN3-208ENST00000561505 CFAP47Q6ZTR5 3102 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 DCLK1O15075 740 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 TACC1O75410 805 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 NFATC1O95644 943 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 CAVIN2O95810 425 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 TMEM191BP0C7N4 346 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 PDCP20941 246 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 EIF2DP41214 584 aaKnown RBP17.57■□□□□ 0.4
CLN3-208ENST00000561505 USP46P62068 366 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 MYO1EQ12965 1108 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 SLC39A14Q15043 492 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 CNNM4Q6P4Q7 775 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 DENND5BQ6ZUT9 1274 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 SCN4BQ8IWT1 228 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 MYCBPAPQ8TBZ2 947 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 HPDLQ96IR7 371 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 ANKRD36BP1Q96IX9 119 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 CNOT6LQ96LI5 555 aaKnown RBP17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms