RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 CGNQ9P2M7 1197 aaKnown RBP15.03■□□□□ -0
LDLR-213ENST00000560502 GREB1Q4ZG55 1949 aa15.03■□□□□ -0
LDLR-213ENST00000560502 CHD8Q9HCK8 2581 aa15.03■□□□□ -0
LDLR-213ENST00000560502 MAP1BP46821 2468 aaKnown RBP15.03■□□□□ -0
LDLR-213ENST00000560502 CNOT1A5YKK6 2376 aaKnown RBP15.03■□□□□ -0
LDLR-213ENST00000560502 ZNF638Q14966 1978 aaKnown RBP15.02■□□□□ -0
LDLR-213ENST00000560502 ITIH6Q6UXX5 1313 aa15.02■□□□□ -0
LDLR-213ENST00000560502 ANO9A1A5B4 782 aa15.02■□□□□ -0
LDLR-213ENST00000560502 K7ENM7 598 aa15.02■□□□□ -0
LDLR-213ENST00000560502 HRO43593 1189 aa15.02■□□□□ -0
LDLR-213ENST00000560502 LRP3O75074 770 aa15.02■□□□□ -0
LDLR-213ENST00000560502 SOAT2O75908 522 aa15.02■□□□□ -0
LDLR-213ENST00000560502 GCNT3O95395 438 aa15.02■□□□□ -0
LDLR-213ENST00000560502 PRAMEF12O95522 483 aa15.02■□□□□ -0
LDLR-213ENST00000560502 FGF19O95750 216 aa15.02■□□□□ -0
LDLR-213ENST00000560502 RETP07949 1114 aa15.02■□□□□ -0
LDLR-213ENST00000560502 NFICP08651 508 aa15.02■□□□□ -0
LDLR-213ENST00000560502 ODC1P11926 461 aa15.02■□□□□ -0
LDLR-213ENST00000560502 RPL13P26373 211 aaKnown RBP15.02■□□□□ -0
LDLR-213ENST00000560502 KPNA1P52294 538 aaPredicted RBP15.02■□□□□ -0
LDLR-213ENST00000560502 PMS1P54277 932 aaKnown RBP15.02■□□□□ -0
LDLR-213ENST00000560502 ARHGAP29Q52LW3 1261 aa15.02■□□□□ -0
LDLR-213ENST00000560502 DGKKQ5KSL6 1271 aa15.02■□□□□ -0
LDLR-213ENST00000560502 APTXQ7Z2E3 356 aaKnown RBP15.02■□□□□ -0
LDLR-213ENST00000560502 VSTM4Q8IW00 320 aa15.02■□□□□ -0
LDLR-213ENST00000560502 CD302Q8IX05 232 aa15.02■□□□□ -0
LDLR-213ENST00000560502 CCDC150Q8NCX0 1101 aa15.02■□□□□ -0
LDLR-213ENST00000560502 SRRTQ9BXP5 876 aaKnown RBP15.02■□□□□ -0
LDLR-213ENST00000560502 ZCWPW1Q9H0M4 648 aa15.02■□□□□ -0
LDLR-213ENST00000560502 IL21Q9HBE4 155 aa15.02■□□□□ -0
LDLR-213ENST00000560502 RAB23Q9ULC3 237 aa15.02■□□□□ -0
LDLR-213ENST00000560502 CHURC1-FNTBB4DL54 471 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 PPP1R37O75864 691 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 ATF6P18850 670 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 GABRR2P28476 465 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 HOXA6P31267 233 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 FNTBP49356 437 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 MARSP56192 900 aaKnown RBP15.01□□□□□ -0.01
LDLR-213ENST00000560502 CCINQ13939 588 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 NR1I3Q14994 352 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 KRT31Q15323 416 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 GPR158Q5T848 1215 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 ZNF720Q7Z2F6 126 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 ITIH5Q86UX2 942 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 GPIHBP1Q8IV16 184 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 TMEM174Q8WUU8 243 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 ZFYVE19Q96K21 471 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 LPIN3Q9BQK8 851 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 MSTO1Q9BUK6 570 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 STRA6Q9BX79 667 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 ATXN3LQ9H3M9 355 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 TMEM206Q9H813 350 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 RTN4Q9NQC3 1192 aaKnown RBP15.01□□□□□ -0.01
LDLR-213ENST00000560502 C2orf42Q9NWW7 574 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 GTSE1Q9NYZ3 720 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 DERAQ9Y315 318 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.01□□□□□ -0.01
LDLR-213ENST00000560502 EML5Q05BV3 1969 aa15.01□□□□□ -0.01
LDLR-213ENST00000560502 DCDC2BA2VCK2 349 aa15□□□□□ -0.01
LDLR-213ENST00000560502 LGALS16A8MUM7 142 aa15□□□□□ -0.01
LDLR-213ENST00000560502 NRDCO43847 1150 aa15□□□□□ -0.01
LDLR-213ENST00000560502 CNR2P34972 360 aa15□□□□□ -0.01
LDLR-213ENST00000560502 COPB1P53618 953 aaKnown RBP15□□□□□ -0.01
LDLR-213ENST00000560502 GTF2BQ00403 316 aa15□□□□□ -0.01
LDLR-213ENST00000560502 SRSF5Q13243 272 aaKnown RBP15□□□□□ -0.01
LDLR-213ENST00000560502 TRIM14Q14142 442 aa15□□□□□ -0.01
LDLR-213ENST00000560502 SIM2Q14190 667 aaPredicted RBP15□□□□□ -0.01
LDLR-213ENST00000560502 TMEM132DQ14C87 1099 aa15□□□□□ -0.01
LDLR-213ENST00000560502 SPECC1LQ69YQ0 1117 aa15□□□□□ -0.01
LDLR-213ENST00000560502 ARMCX5Q6P1M9 558 aa15□□□□□ -0.01
LDLR-213ENST00000560502 PRR23BQ6ZRT6 265 aa15□□□□□ -0.01
LDLR-213ENST00000560502 HS2ST1Q7LGA3 356 aa15□□□□□ -0.01
LDLR-213ENST00000560502 FILIP1Q7Z7B0 1213 aa15□□□□□ -0.01
LDLR-213ENST00000560502 ZSCAN30Q86W11 494 aa15□□□□□ -0.01
LDLR-213ENST00000560502 LONP2Q86WA8 852 aa15□□□□□ -0.01
LDLR-213ENST00000560502 IRF2BP1Q8IU81 584 aa15□□□□□ -0.01
LDLR-213ENST00000560502 SPC24Q8NBT2 197 aa15□□□□□ -0.01
LDLR-213ENST00000560502 NETO1Q8TDF5 533 aa15□□□□□ -0.01
LDLR-213ENST00000560502 IQCDQ96DY2 449 aa15□□□□□ -0.01
LDLR-213ENST00000560502 CNOT6LQ96LI5 555 aaKnown RBP15□□□□□ -0.01
LDLR-213ENST00000560502 CNTNAP3BQ96NU0 1288 aa15□□□□□ -0.01
LDLR-213ENST00000560502 CNTNAP3Q9BZ76 1288 aa15□□□□□ -0.01
LDLR-213ENST00000560502 TASP1Q9H6P5 420 aa15□□□□□ -0.01
LDLR-213ENST00000560502 TBC1D7Q9P0N9 293 aa15□□□□□ -0.01
LDLR-213ENST00000560502 C2CD2Q9Y426 696 aa15□□□□□ -0.01
LDLR-213ENST00000560502 STYXL1Q9Y6J8 313 aa15□□□□□ -0.01
LDLR-213ENST00000560502 SDK1Q7Z5N4 2213 aa15□□□□□ -0.01
LDLR-213ENST00000560502 KIAA1549LQ6ZVL6 1849 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 A0A1W2PQC6 194 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 TISP43B9A030 160 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 ANKRD63C9JTQ0 380 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 SLC30A4O14863 429 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 CETN3O15182 167 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 SLC16A3O15427 465 aaKnown RBP14.99□□□□□ -0.01
LDLR-213ENST00000560502 CDC25CP30307 473 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 HOXC13P31276 330 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 TUFMP49411 452 aaKnown RBP14.99□□□□□ -0.01
LDLR-213ENST00000560502 CASP5P51878 434 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 CYP4F8P98187 520 aa14.99□□□□□ -0.01
LDLR-213ENST00000560502 PON2Q15165 354 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms