RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 DNAAF5Q86Y56 855 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 NPAS4Q8IUM7 802 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 FBXL13Q8NEE6 735 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 APBB2Q92870 758 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 MRFAP1L1Q96HT8 127 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 ANKRD36BP1Q96IX9 119 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 B3GALT6Q96L58 329 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 KREMEN1Q96MU8 473 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 ERGIC2Q96RQ1 377 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 HTATIP2Q9BUP3 242 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 TRAIPQ9BWF2 469 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 TTYH3Q9C0H2 523 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 XYLT2Q9H1B5 865 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 ASB7Q9H672 318 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 ACP6Q9NPH0 428 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 TBC1D13Q9NVG8 400 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 RAB20Q9NX57 234 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 TMEM161AQ9NX61 479 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 DPP3Q9NY33 737 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 ABI2Q9NYB9 513 aaPredicted RBP5.6□□□□□ -1.51
SPG11-220ENST00000559933 AGAP1Q9UPQ3 857 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 GIT1Q9Y2X7 761 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 PRG3Q9Y2Y8 225 aaPredicted RBP5.6□□□□□ -1.51
SPG11-220ENST00000559933 CEP290O15078 2479 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 TTC3P53804 2025 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 GBF1Q92538 1859 aa5.6□□□□□ -1.51
SPG11-220ENST00000559933 ITIH6Q6UXX5 1313 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 SCO2A0A1W2PP80 73 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 A0A1W2PQC6 194 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 LRRC53A6NM62 1247 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 H0YGN5 161 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 MFAP3LO75121 409 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 ZNF623O75123 536 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 ZC3H11AO75152 810 aaKnown RBP eCLIP5.59□□□□□ -1.51
SPG11-220ENST00000559933 FGBP02675 491 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 AMHP03971 560 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 THP07101 528 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 PLEKP08567 350 aaPredicted RBP5.59□□□□□ -1.51
SPG11-220ENST00000559933 WEE2P0C1S8 567 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 H2AFB1P0C5Y9 115 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 H2AFB2P0C5Z0 115 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 UCHL3P15374 230 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 TRIM21P19474 475 aaKnown RBP5.59□□□□□ -1.51
SPG11-220ENST00000559933 RFC2P35250 354 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 ASPAP45381 313 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 OR1G1P47890 313 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 KCNJ6P48051 423 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 SLC11A1P49279 550 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 NOP14P78316 857 aaKnown RBP5.59□□□□□ -1.51
SPG11-220ENST00000559933 ARID5AQ03989 594 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 GRIK3Q13003 919 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 PPIGQ13427 754 aaKnown RBP eCLIP5.59□□□□□ -1.51
SPG11-220ENST00000559933 TRPC3Q13507 836 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 SHHQ15465 462 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 KYAT1Q16773 422 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 DUOXA2Q1HG44 320 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 ALKBH2Q6NS38 261 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 PDXDC1Q6P996 788 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 GLB1LQ6UWU2 654 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 CCDC186Q7Z3E2 898 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 APBB1IPQ7Z5R6 666 aaPredicted RBP5.59□□□□□ -1.51
SPG11-220ENST00000559933 PPM1KQ8N3J5 372 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 BEST2Q8NFU1 509 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 NEK11Q8NG66 645 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 WFDC12Q8WWY7 111 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 PGBD4Q96DM1 585 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 HPDLQ96IR7 371 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 PDLIM2Q96JY6 352 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 TWNKQ96RR1 684 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 NAA15Q9BXJ9 866 aaKnown RBP5.59□□□□□ -1.51
SPG11-220ENST00000559933 FTHL17Q9BXU8 183 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 MRPL18Q9H0U6 180 aaKnown RBP5.59□□□□□ -1.51
SPG11-220ENST00000559933 KCNF1Q9H3M0 494 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 CWH43Q9H720 699 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 NRDE2Q9H7Z3 1164 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 PLEKHA5Q9HAU0 1116 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 RC3H2Q9HBD1 1191 aaKnown RBP5.59□□□□□ -1.51
SPG11-220ENST00000559933 C1orf112Q9NSG2 853 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 DNAJC12Q9UKB3 198 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 ITGA11Q9UKX5 1188 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 UBQLN1Q9UMX0 589 aaKnown RBP5.59□□□□□ -1.51
SPG11-220ENST00000559933 TRIM33Q9UPN9 1127 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 C2CD2Q9Y426 696 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 NME7Q9Y5B8 376 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 PCDHB7Q9Y5E2 793 aa5.59□□□□□ -1.51
SPG11-220ENST00000559933 TIMM13Q9Y5L4 95 aaPredicted RBP5.59□□□□□ -1.51
SPG11-220ENST00000559933 MRPL42Q9Y6G3 142 aaKnown RBP5.59□□□□□ -1.51
SPG11-220ENST00000559933 CACNA1AO00555 2505 aa5.58□□□□□ -1.52
SPG11-220ENST00000559933 ABHD14A-ACY1A0A1B0GW23 586 aa5.58□□□□□ -1.52
SPG11-220ENST00000559933 ANO9A1A5B4 782 aa5.58□□□□□ -1.52
SPG11-220ENST00000559933 GTPBP10A4D1E9 387 aaKnown RBP5.58□□□□□ -1.52
SPG11-220ENST00000559933 F8VZ95 297 aa5.58□□□□□ -1.52
SPG11-220ENST00000559933 PIRO00625 290 aa5.58□□□□□ -1.52
SPG11-220ENST00000559933 INPPL1O15357 1258 aa5.58□□□□□ -1.52
SPG11-220ENST00000559933 STX10O60499 249 aa5.58□□□□□ -1.52
SPG11-220ENST00000559933 N4BP1O75113 896 aaKnown RBP5.58□□□□□ -1.52
SPG11-220ENST00000559933 DEAF1O75398 565 aaPredicted RBP5.58□□□□□ -1.52
SPG11-220ENST00000559933 DGKIO75912 1065 aa5.58□□□□□ -1.52
SPG11-220ENST00000559933 GFPT2O94808 682 aa5.58□□□□□ -1.52
SPG11-220ENST00000559933 ASS1P00966 412 aaKnown RBP5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms