RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 LONP2Q86WA8 852 aa12.47□□□□□ -0.41
USP3-214ENST00000559718 SPATA2LQ8IUW3 424 aaPredicted RBP12.47□□□□□ -0.41
USP3-214ENST00000559718 SCN4BQ8IWT1 228 aa12.47□□□□□ -0.41
USP3-214ENST00000559718 RDH13Q8NBN7 331 aa12.47□□□□□ -0.41
USP3-214ENST00000559718 TTC16Q8NEE8 873 aa12.47□□□□□ -0.41
USP3-214ENST00000559718 ANKRD36BP1Q96IX9 119 aa12.47□□□□□ -0.41
USP3-214ENST00000559718 SYT15Q9BQS2 421 aa12.47□□□□□ -0.41
USP3-214ENST00000559718 TNMDQ9H2S6 317 aa12.47□□□□□ -0.41
USP3-214ENST00000559718 HSPBP1Q9NZL4 362 aa12.47□□□□□ -0.41
USP3-214ENST00000559718 ZMYM5Q9UJ78 669 aa12.47□□□□□ -0.41
USP3-214ENST00000559718 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.47□□□□□ -0.41
USP3-214ENST00000559718 DCDC2BA2VCK2 349 aa12.46□□□□□ -0.41
USP3-214ENST00000559718 C2orf78A6NCI8 922 aa12.46□□□□□ -0.41
USP3-214ENST00000559718 TRDMT1O14717 391 aaKnown RBP12.46□□□□□ -0.41
USP3-214ENST00000559718 TGFB1I1O43294 461 aa12.46□□□□□ -0.41
USP3-214ENST00000559718 EGFP01133 1207 aa12.46□□□□□ -0.41
USP3-214ENST00000559718 TNNC2P02585 160 aa12.46□□□□□ -0.41
USP3-214ENST00000559718 RETP07949 1114 aa12.46□□□□□ -0.41
USP3-214ENST00000559718 PDGFRBP09619 1106 aa12.46□□□□□ -0.41
USP3-214ENST00000559718 CASP1P29466 404 aa12.46□□□□□ -0.41
USP3-214ENST00000559718 GRSF1Q12849 480 aaKnown RBP eCLIP12.46□□□□□ -0.41
USP3-214ENST00000559718 DUOXA2Q1HG44 320 aa12.46□□□□□ -0.41
USP3-214ENST00000559718 FOXD4L6Q3SYB3 417 aaPredicted RBP12.46□□□□□ -0.41
USP3-214ENST00000559718 CFAP221Q4G0U5 840 aa12.46□□□□□ -0.41
USP3-214ENST00000559718 SHC4Q6S5L8 630 aa12.46□□□□□ -0.41
USP3-214ENST00000559718 FOXD4L3Q6VB84 417 aaPredicted RBP12.46□□□□□ -0.41
USP3-214ENST00000559718 EPM2AIP1Q7L775 607 aaPredicted RBP12.46□□□□□ -0.41
USP3-214ENST00000559718 SYNPOQ8N3V7 929 aa12.46□□□□□ -0.41
USP3-214ENST00000559718 ARL14EPQ8N8R7 260 aaPredicted RBP12.46□□□□□ -0.41
USP3-214ENST00000559718 SPATA18Q8TC71 538 aa12.46□□□□□ -0.41
USP3-214ENST00000559718 MYLPFQ96A32 169 aa12.46□□□□□ -0.41
USP3-214ENST00000559718 TRMT2BQ96GJ1 504 aaKnown RBP12.46□□□□□ -0.41
USP3-214ENST00000559718 MYRFLQ96LU7 910 aa12.46□□□□□ -0.41
USP3-214ENST00000559718 BACH2Q9BYV9 841 aa12.46□□□□□ -0.41
USP3-214ENST00000559718 KIF9Q9HAQ2 790 aa12.46□□□□□ -0.41
USP3-214ENST00000559718 CRTAC1Q9NQ79 661 aa12.46□□□□□ -0.41
USP3-214ENST00000559718 CDV3Q9UKY7 258 aaKnown RBP12.46□□□□□ -0.41
USP3-214ENST00000559718 NME7Q9Y5B8 376 aa12.46□□□□□ -0.41
USP3-214ENST00000559718 ANAPC1Q9H1A4 1944 aa12.46□□□□□ -0.42
USP3-214ENST00000559718 NCOR2Q9Y618 2525 aa12.46□□□□□ -0.42
USP3-214ENST00000559718 GREB1Q4ZG55 1949 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 PRR5-ARHGAP8B1AHC4 643 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 KIAA0391O15091 583 aaKnown RBP12.45□□□□□ -0.42
USP3-214ENST00000559718 CLIC2O15247 247 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 RNF40O75150 1001 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 PPP6R2O75170 966 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 CST3P01034 146 aaPredicted RBP12.45□□□□□ -0.42
USP3-214ENST00000559718 NUDT7P0C024 238 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 BDNFP23560 247 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 HOXA6P31267 233 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 GALK1P51570 392 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 USP46P62068 366 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 ARHGAP8P85298 464 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 FAM160A1Q05DH4 1040 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 MYO1EQ12965 1108 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 ZNF268Q14587 947 aaPredicted RBP12.45□□□□□ -0.42
USP3-214ENST00000559718 MTF1Q14872 753 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 ZNF77Q15935 545 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 FAM26FQ5R3K3 315 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 CC2D1AQ6P1N0 951 aaPredicted RBP12.45□□□□□ -0.42
USP3-214ENST00000559718 STXBP4Q6ZWJ1 553 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 TRAPPC11Q7Z392 1133 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.45□□□□□ -0.42
USP3-214ENST00000559718 WDR5BQ86VZ2 330 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 NELFCDQ8IXH7 590 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 FAM160A2Q8N612 972 aaPredicted RBP12.45□□□□□ -0.42
USP3-214ENST00000559718 ZNF507Q8TCN5 953 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 FUBP3Q96I24 572 aaKnown RBP eCLIP12.45□□□□□ -0.42
USP3-214ENST00000559718 MMS19Q96T76 1030 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 MRPL45Q9BRJ2 306 aaKnown RBP12.45□□□□□ -0.42
USP3-214ENST00000559718 ECT2Q9H8V3 914 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 AGPAT3Q9NRZ7 376 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 SEMA4GQ9NTN9 838 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 GCNT4Q9P109 453 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 UXTQ9UBK9 157 aaPredicted RBP12.45□□□□□ -0.42
USP3-214ENST00000559718 CDH9Q9ULB4 789 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 WNT6Q9Y6F9 365 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 RALGAPA1Q6GYQ0 2036 aa12.45□□□□□ -0.42
USP3-214ENST00000559718 TRAV19A0A0A6YYK7 116 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 SOBPA7XYQ1 873 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 EIF3DO15371 548 aaKnown RBP eCLIP12.44□□□□□ -0.42
USP3-214ENST00000559718 GDF9O60383 454 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 CUTAO60888 179 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 CKMP06732 381 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 USP17L7P0C7H9 530 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 DLATP10515 647 aaKnown RBP12.44□□□□□ -0.42
USP3-214ENST00000559718 WARSP23381 471 aaKnown RBP12.44□□□□□ -0.42
USP3-214ENST00000559718 CNR2P34972 360 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 GJA4P35212 333 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 MAGEA11P43364 429 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 CYP2J2P51589 502 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 ZXDBP98169 803 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 CYP27A1Q02318 531 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 USP4Q13107 963 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 PDGFRLQ15198 375 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 SURF1Q15526 300 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 SNRNP35Q16560 246 aaKnown RBP12.44□□□□□ -0.42
USP3-214ENST00000559718 CNNM4Q6P4Q7 775 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 CEP68Q76N32 757 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 DPH6Q7L8W6 267 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms