RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 PCDHGA6Q9Y5G7 932 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 PCDHGA3Q9Y5H0 932 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 PCDHGA2Q9Y5H1 932 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 CDC14CA4D256 554 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 C2orf71A6NGG8 1288 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 E9PMD0 336 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 H3BML4 177 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 DDX39AO00148 427 aaKnown RBP5.56□□□□□ -1.52
LDLR-209ENST00000558528 BIN1O00499 593 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 TNPO2O14787 897 aaKnown RBP5.56□□□□□ -1.52
LDLR-209ENST00000558528 AURKAO14965 403 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 DDX3YO15523 660 aaKnown RBP5.56□□□□□ -1.52
LDLR-209ENST00000558528 CHMP2AO43633 222 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 ADAM11O75078 769 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 ATP9AO75110 1047 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 FARP2O94887 1054 aaPredicted RBP5.56□□□□□ -1.52
LDLR-209ENST00000558528 GNA14O95837 355 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 DLGAP3O95886 979 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 GH1P01241 217 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 FAM163BP0C2L3 166 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 SUPT20HL2P0C7V6 817 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 TXNP10599 105 aaKnown RBP5.56□□□□□ -1.52
LDLR-209ENST00000558528 TAL1P17542 331 aaPredicted RBP5.56□□□□□ -1.52
LDLR-209ENST00000558528 CYP11B2P19099 503 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 CCNE1P24864 410 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 RPL13P26373 211 aaKnown RBP5.56□□□□□ -1.52
LDLR-209ENST00000558528 YWHABP31946 246 aaKnown RBP5.56□□□□□ -1.52
LDLR-209ENST00000558528 GRK6P43250 576 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 GPR3P46089 330 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 SEPHS1P49903 392 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 DNM2P50570 870 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 RENBPP51606 427 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 STAT5BP51692 787 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 SLC12A3P55017 1021 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 SCAND1P57086 179 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 ACTR2P61160 394 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 LACTBP83111 547 aaPredicted RBP5.56□□□□□ -1.52
LDLR-209ENST00000558528 CDC42EP1Q00587 391 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 CNTN2Q02246 1040 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 LRRC63Q05C16 580 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 CYP4F3Q08477 520 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 TBX2Q13207 712 aaPredicted RBP5.56□□□□□ -1.52
LDLR-209ENST00000558528 ITGB3BPQ13352 177 aaPredicted RBP5.56□□□□□ -1.52
LDLR-209ENST00000558528 CTTNQ14247 550 aaKnown RBP5.56□□□□□ -1.52
LDLR-209ENST00000558528 DPY19L1Q2PZI1 675 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 HERC4Q5GLZ8 1057 aaPredicted RBP5.56□□□□□ -1.52
LDLR-209ENST00000558528 CELF3Q5SZQ8 465 aaKnown RBP5.56□□□□□ -1.52
LDLR-209ENST00000558528 DARS2Q6PI48 645 aaKnown RBP5.56□□□□□ -1.52
LDLR-209ENST00000558528 SARM1Q6SZW1 724 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 ABHD15Q6UXT9 468 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 CCDC149Q6ZUS6 474 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 FRMD7Q6ZUT3 714 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 ARMCX2Q7L311 632 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 PLPPR4Q7Z2D5 763 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 GPBP1Q86WP2 473 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 GAS2L3Q86XJ1 694 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 GUF1Q8N442 669 aaKnown RBP5.56□□□□□ -1.52
LDLR-209ENST00000558528 GPATCH11Q8N954 259 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 GALNT11Q8NCW6 608 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 MCPH1Q8NEM0 835 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 IL31RAQ8NI17 732 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 GOLGA5Q8TBA6 731 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 AFAP1L1Q8TED9 768 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 DIS3LQ8TF46 1054 aaKnown RBP5.56□□□□□ -1.52
LDLR-209ENST00000558528 POF1BQ8WVV4 589 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 NANOS1Q8WY41 292 aaKnown RBP5.56□□□□□ -1.52
LDLR-209ENST00000558528 CCT6BQ92526 530 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 KIFAP3Q92845 792 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 SKA1Q96BD8 255 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 TRIM44Q96DX7 344 aaPredicted RBP5.56□□□□□ -1.52
LDLR-209ENST00000558528 C1GALT1C1Q96EU7 318 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 MPP4Q96JB8 637 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 MAML3Q96JK9 1138 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 SGCZQ96LD1 299 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 PLIN2Q99541 437 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 LXNQ9BS40 222 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 ZDHHC5Q9C0B5 715 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 PORCNQ9H237 461 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 BLZF1Q9H2G9 400 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 BHMT2Q9H2M3 363 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 SMARCAD1Q9H4L7 1026 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 TMEM206Q9H813 350 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 PARVGQ9HBI0 331 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 ATP13A2Q9NQ11 1180 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 ZNF302Q9NR11 478 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 CHST7Q9NS84 486 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 CCM2LQ9NUG4 571 aaPredicted RBP5.56□□□□□ -1.52
LDLR-209ENST00000558528 CGNQ9P2M7 1197 aaKnown RBP5.56□□□□□ -1.52
LDLR-209ENST00000558528 CPA4Q9UI42 421 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 USP34Q70CQ2 3546 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 WDFY4Q6ZS81 3184 aa5.56□□□□□ -1.52
LDLR-209ENST00000558528 XIRP2A4UGR9 3374 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 UBE4BO95155 1302 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 BAHCC1Q9P281 2608 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 MYH8P13535 1937 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 MYH4Q9Y623 1939 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 IGKV6D-21A0A0A0MT36 114 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 SLC12A8A0AV02 714 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 FRMD3A2A2Y4 597 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 MYMKA6NI61 221 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms