RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 HNRNPRO43390 633 aaKnown RBP11.85□□□□□ -0.51
LDLR-208ENST00000558518 DGKIO75912 1065 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 C6orf222P0C671 652 aaPredicted RBP11.85□□□□□ -0.51
LDLR-208ENST00000558518 RBP3P10745 1247 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 KLRC2P26717 231 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 CYP24A1Q07973 514 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 PSMD6Q15008 389 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 IYDQ6PHW0 289 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 CDHR3Q6ZTQ4 885 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 IGDCC3Q8IVU1 814 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 RBM41Q96IZ5 413 aaKnown RBP11.85□□□□□ -0.51
LDLR-208ENST00000558518 PPP1R16BQ96T49 567 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 MXRA8Q9BRK3 442 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 PICK1Q9NRD5 415 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 RAB6BQ9NRW1 208 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 ETNK2Q9NVF9 386 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 RABGEF1Q9UJ41 708 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 KLHL33A6NCF5 533 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 CREB3O43889 395 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 TYROBPO43914 113 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 GRIN3BO60391 1043 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 NELFEP18615 380 aaKnown RBP11.85□□□□□ -0.51
LDLR-208ENST00000558518 SAT1P21673 171 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 EIF3EP60228 445 aaKnown RBP11.85□□□□□ -0.51
LDLR-208ENST00000558518 ZNF200P98182 395 aaPredicted RBP11.85□□□□□ -0.51
LDLR-208ENST00000558518 TFAMQ00059 246 aaKnown RBP11.85□□□□□ -0.51
LDLR-208ENST00000558518 SPP2Q13103 211 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 MMRN1Q13201 1228 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 CNPY1Q3B7I2 92 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 HACE1Q8IYU2 909 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 ST13P4Q8IZP2 240 aaPredicted RBP11.85□□□□□ -0.51
LDLR-208ENST00000558518 GPD1LQ8N335 351 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 GALNT4Q8N4A0 578 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 CRYGNQ8WXF5 182 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 SRPK1Q96SB4 655 aaKnown RBP11.85□□□□□ -0.51
LDLR-208ENST00000558518 PARVAQ9NVD7 372 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 COL20A1Q9P218 1284 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 APPL1Q9UKG1 709 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 NR2E3Q9Y5X4 410 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 MYPNQ86TC9 1320 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 IQANK1A0A1B0GTG1 560 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 WDR64B1ANS9 1081 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 PRPF4O43172 522 aaKnown RBP eCLIP11.85□□□□□ -0.516e-9■■□□□ 13.2
LDLR-208ENST00000558518 TMEM63AO94886 807 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 TCN1P20061 433 aaPredicted RBP11.85□□□□□ -0.51
LDLR-208ENST00000558518 RPL22P35268 128 aaKnown RBP11.85□□□□□ -0.51
LDLR-208ENST00000558518 VCPP55072 806 aaKnown RBP11.85□□□□□ -0.51
LDLR-208ENST00000558518 SATL1Q86VE3 508 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 NDUFAF2Q8N183 169 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 ALLCQ8N6M5 410 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 TTLL6Q8N841 843 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 EXD1Q8NHP7 514 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 TAAR1Q96RJ0 339 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 CENPKQ9BS16 269 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 IL1RAPL1Q9NZN1 696 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 SENP1Q9P0U3 644 aa11.85□□□□□ -0.51
LDLR-208ENST00000558518 MTO1Q9Y2Z2 717 aaKnown RBP11.85□□□□□ -0.51
LDLR-208ENST00000558518 SPATA31D3P0C874 917 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 UNGP13051 313 aaPredicted RBP11.84□□□□□ -0.51
LDLR-208ENST00000558518 KCNA4P22459 653 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 AP1B1Q10567 949 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 MED21Q13503 144 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 ACAP1Q15027 740 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 GPAT2Q6NUI2 795 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 SPATA31D4Q6ZUB0 917 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 ULK2Q8IYT8 1036 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 ENDOVQ8N8Q3 282 aaKnown RBP11.84□□□□□ -0.51
LDLR-208ENST00000558518 SPATA18Q8TC71 538 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 ZNF516Q92618 1163 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 MPP4Q96JB8 637 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 PRMT6Q96LA8 375 aaPredicted RBP11.84□□□□□ -0.51
LDLR-208ENST00000558518 TARS2Q9BW92 718 aaKnown RBP11.84□□□□□ -0.51
LDLR-208ENST00000558518 GPATCH2LQ9NWQ4 482 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 TMOD2Q9NZR1 351 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 SLC17A6Q9P2U8 582 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 LNPEPQ9UIQ6 1025 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 MYO18AQ92614 2054 aaKnown RBP11.84□□□□□ -0.51
LDLR-208ENST00000558518 E7ENQ6 273 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 RNASEH1O60930 286 aaKnown RBP11.84□□□□□ -0.51
LDLR-208ENST00000558518 RPL10AP62906 217 aaKnown RBP11.84□□□□□ -0.51
LDLR-208ENST00000558518 KLF1Q13351 362 aaPredicted RBP11.84□□□□□ -0.51
LDLR-208ENST00000558518 NCOA4Q13772 614 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 SLC15A2Q16348 729 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 SDCCAG8Q86SQ7 713 aaPredicted RBP11.84□□□□□ -0.51
LDLR-208ENST00000558518 CRLF3Q8IUI8 442 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 SEPT12Q8IYM1 358 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 RCOR2Q8IZ40 523 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 CPT1BQ92523 772 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 E2F7Q96AV8 911 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 HIC2Q96JB3 615 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 PANX3Q96QZ0 392 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 ASCC2Q9H1I8 757 aaPredicted RBP11.84□□□□□ -0.51
LDLR-208ENST00000558518 VCX3BQ9H321 246 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 VCX3AQ9NNX9 186 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 MAN1C1Q9NR34 630 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 RBAKQ9NYW8 714 aaPredicted RBP11.84□□□□□ -0.51
LDLR-208ENST00000558518 IP6K2Q9UHH9 426 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 ACTL7BQ9Y614 415 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 PROCP04070 461 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 CRADDP78560 199 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms