RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 GPS1Q13098 491 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 TAZQ16635 292 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 KCTD19Q17RG1 926 aaPredicted RBP7.64□□□□□ -1.19
VPS13C-206ENST00000558338 PTPN20Q4JDL3 420 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 ZNF394Q53GI3 561 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 DAB2IPQ5VWQ8 1189 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 DENND1BQ6P3S1 775 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 BBS12Q6ZW61 710 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 ANKS1BQ7Z6G8 1248 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 CCDC13Q8IYE1 715 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 LRRC34Q8IZ02 419 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 WDTC1Q8N5D0 677 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 GBP7Q8N8V2 638 aaPredicted RBP7.64□□□□□ -1.19
VPS13C-206ENST00000558338 SLC35B2Q8TB61 432 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 EMID1Q96A84 441 aaPredicted RBP7.64□□□□□ -1.19
VPS13C-206ENST00000558338 GRAMD1AQ96CP6 724 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 SAYSD1Q9NPB0 183 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 KLHL11Q9NVR0 708 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 ASNSD1Q9NWL6 643 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 CUEDC1Q9NWM3 386 aaPredicted RBP7.64□□□□□ -1.19
VPS13C-206ENST00000558338 NXF1Q9UBU9 619 aaKnown RBP7.64□□□□□ -1.19
VPS13C-206ENST00000558338 SLC24A2Q9UI40 661 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 ZMIZ1Q9ULJ6 1067 aa7.64□□□□□ -1.19
VPS13C-206ENST00000558338 SMG5Q9UPR3 1016 aaKnown RBP7.64□□□□□ -1.19
VPS13C-206ENST00000558338 F8VP50 259 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 PI4K2BG5E9Z4 385 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 SGK1O00141 431 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 GPR37L1O60883 481 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 CILPO75339 1184 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 SUN1O94901 812 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 GJB6O95452 261 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 PGK2P07205 417 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 STAG3L1P0CL83 205 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 KRT10P13645 584 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 STX2P32856 288 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 PCK1P35558 622 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 SERPINB4P48594 390 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 CLCN3P51790 818 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 RAD23BP54727 409 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 ARL4CP56559 192 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 SNX16P57768 344 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 IL9RQ01113 521 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 OGDHQ02218 1023 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 TMEM132DQ14C87 1099 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 R3HDM1Q15032 1099 aaKnown RBP7.63□□□□□ -1.19
VPS13C-206ENST00000558338 WDR72Q3MJ13 1102 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 UBAP2Q5T6F2 1119 aaKnown RBP7.63□□□□□ -1.19
VPS13C-206ENST00000558338 RNASEH2BQ5TBB1 312 aaKnown RBP7.63□□□□□ -1.19
VPS13C-206ENST00000558338 CYP4A22Q5TCH4 519 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 TMEM164Q5U3C3 297 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 EEF1DP3Q658K8 133 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 VSTM1Q6UX27 236 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 XYLT1Q86Y38 959 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 PPIL6Q8IXY8 311 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 C1orf127Q8N9H9 656 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 NLGN2Q8NFZ4 835 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 STK32AQ8WU08 396 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 CKAP2Q8WWK9 683 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 TFAP2BQ92481 460 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 CCT6BQ92526 530 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 MCRS1Q96EZ8 462 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 TMEM176AQ96HP8 235 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 MAGEB18Q96M61 343 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 ADPGKQ9BRR6 497 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 DNAI2Q9GZS0 605 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 KCNK9Q9NPC2 374 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 RBPJLQ9UBG7 517 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 PLXNA1Q9UIW2 1896 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 POLIQ9UNA4 740 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 C2CD2Q9Y426 696 aa7.63□□□□□ -1.19
VPS13C-206ENST00000558338 PLXNB2O15031 1838 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 CFAP73A6NFT4 308 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 FAM47DPA6NHR8 397 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 LACTBL1A8MY62 500 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 GOLGA8SH3BPF8 625 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 ARHGAP33O14559 1287 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 MCF2LO15068 1137 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 ALOX15BO15296 676 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 PRPF4O43172 522 aaKnown RBP eCLIP7.62□□□□□ -1.19
VPS13C-206ENST00000558338 B4GALT5O43286 388 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 LRCH4O75427 683 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 MICAL2O94851 1124 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 ITGB3P05106 788 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 LGALS2P05162 132 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 NFICP08651 508 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 PECAM1P16284 738 aaPredicted RBP7.62□□□□□ -1.19
VPS13C-206ENST00000558338 ATP2A2P16615 1042 aaKnown RBP7.62□□□□□ -1.19
VPS13C-206ENST00000558338 KDELR1P24390 212 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 RFC1P35251 1148 aaPredicted RBP7.62□□□□□ -1.19
VPS13C-206ENST00000558338 SCTRP47872 440 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 IFNAR2P48551 515 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 OSTNP61366 133 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 IGBP1P78318 339 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 RBP5P82980 135 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 PLCB3Q01970 1234 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 ARHGAP1Q07960 439 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 INCA1Q0VD86 236 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 SNAPC2Q13487 334 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 TMED2Q15363 201 aa7.62□□□□□ -1.19
VPS13C-206ENST00000558338 HIF1AQ16665 826 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms