RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 CACNG4Q9UBN1 327 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 TMEM189-UBE2V1I3L0A0 370 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 XPO1O14980 1071 aaKnown RBP13.14□□□□□ -0.31
SHMT2-233ENST00000557529 HCRTO43612 131 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 CXCL10P02778 98 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 DESP17661 470 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 TYMPP19971 482 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 PLA2G4AP47712 749 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 RPL34P49207 117 aaKnown RBP13.14□□□□□ -0.31
SHMT2-233ENST00000557529 RGS7P49802 495 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 MNX1P50219 401 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-233ENST00000557529 ATN1P54259 1190 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-233ENST00000557529 PLCB3Q01970 1234 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 OGDHQ02218 1023 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 DSC1Q08554 894 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 ZNF252P-AS1Q0IIN9 211 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 MAP9Q49MG5 647 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 FAM183BPQ6ZVS7 135 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 SLC13A5Q86YT5 568 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-233ENST00000557529 KLHL7Q8IXQ5 586 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 ABI1Q8IZP0 508 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 ANKLE1Q8NAG6 615 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 EXD1Q8NHP7 514 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 CCDC26Q8TAB7 109 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 JOSD2Q8TAC2 188 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 ARMC5Q96C12 935 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 SUSD3Q96L08 255 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 PAAF1Q9BRP4 392 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 DUSP16Q9BY84 665 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 ARFGAP3Q9NP61 516 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 ASNSD1Q9NWL6 643 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 DDX56Q9NY93 547 aaKnown RBP13.14□□□□□ -0.31
SHMT2-233ENST00000557529 STIM2Q9P246 746 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 PCDHB7Q9Y5E2 793 aa13.14□□□□□ -0.31
SHMT2-233ENST00000557529 F8VP50 259 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 ZRANB2O95218 330 aaKnown RBP eCLIP13.13□□□□□ -0.311e-7■□□□□ 9.4
SHMT2-233ENST00000557529 KRT7P08729 469 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 NPR3P17342 541 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 CAPN2P17655 700 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 GPD1P21695 349 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 ACAT1P24752 427 aaKnown RBP13.13□□□□□ -0.31
SHMT2-233ENST00000557529 ZNF143P52747 638 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-233ENST00000557529 TAS2R40P59535 323 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 VSNL1P62760 191 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 SLC6A3Q01959 620 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 TLE2Q04725 743 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 RNASELQ05823 741 aaKnown RBP13.13□□□□□ -0.31
SHMT2-233ENST00000557529 FAAP100Q0VG06 881 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 HADHQ16836 314 aaKnown RBP13.13□□□□□ -0.31
SHMT2-233ENST00000557529 MDH1BQ5I0G3 518 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 OLFML1Q6UWY5 402 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 CD300LGQ6UXG3 332 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 MAATS1Q7Z4T9 603 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 POLNQ7Z5Q5 900 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 COLGALT2Q8IYK4 626 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 RCOR2Q8IZ40 523 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 FUKQ8N0W3 1084 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 THEM5Q8N1Q8 247 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 RBM41Q96IZ5 413 aaKnown RBP13.13□□□□□ -0.31
SHMT2-233ENST00000557529 RUNDC3BQ96NL0 473 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 FAM193BQ96PV7 902 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-233ENST00000557529 NCAPGQ9BPX3 1015 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 LPIN3Q9BQK8 851 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 ACBD6Q9BR61 282 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 CNPY3Q9BT09 278 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 MED10Q9BTT4 135 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 TBC1D13Q9NVG8 400 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.13□□□□□ -0.31
SHMT2-233ENST00000557529 LRFN2Q9ULH4 789 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 PCDHB8Q9UN66 801 aa13.13□□□□□ -0.31
SHMT2-233ENST00000557529 TULP2O00295 520 aa13.12□□□□□ -0.31
SHMT2-233ENST00000557529 DPYSL4O14531 572 aa13.12□□□□□ -0.31
SHMT2-233ENST00000557529 FSCN2O14926 492 aa13.12□□□□□ -0.31
SHMT2-233ENST00000557529 SART1O43290 800 aaKnown RBP13.12□□□□□ -0.31
SHMT2-233ENST00000557529 TRAPPC3O43617 180 aa13.12□□□□□ -0.31
SHMT2-233ENST00000557529 PHF2O75151 1096 aa13.12□□□□□ -0.31
SHMT2-233ENST00000557529 ATP2C2O75185 946 aa13.12□□□□□ -0.31
SHMT2-233ENST00000557529 RNF8O76064 485 aa13.12□□□□□ -0.31
SHMT2-233ENST00000557529 FAM200BP0CF97 657 aa13.12□□□□□ -0.31
SHMT2-233ENST00000557529 IGFBP6P24592 240 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-233ENST00000557529 TNFRSF8P28908 595 aa13.12□□□□□ -0.31
SHMT2-233ENST00000557529 TKTP29401 623 aaKnown RBP13.12□□□□□ -0.31
SHMT2-233ENST00000557529 CHRNA3P32297 505 aa13.12□□□□□ -0.31
SHMT2-233ENST00000557529 BRCC3P46736 316 aa13.12□□□□□ -0.31
SHMT2-233ENST00000557529 C1QTNF8P60827 252 aa13.12□□□□□ -0.31
SHMT2-233ENST00000557529 COPS2P61201 443 aa13.12□□□□□ -0.31
SHMT2-233ENST00000557529 MAPRE1Q15691 268 aaKnown RBP13.12□□□□□ -0.31
SHMT2-233ENST00000557529 TRIM60Q495X7 471 aa13.12□□□□□ -0.31
SHMT2-233ENST00000557529 ODF2Q5BJF6 829 aa13.12□□□□□ -0.31
SHMT2-233ENST00000557529 AADACL2Q6P093 401 aa13.12□□□□□ -0.31
SHMT2-233ENST00000557529 ARCQ7LC44 396 aa13.12□□□□□ -0.31
SHMT2-233ENST00000557529 IFT20Q8IY31 132 aa13.12□□□□□ -0.31
SHMT2-233ENST00000557529 MYCBPAPQ8TBZ2 947 aa13.12□□□□□ -0.31
SHMT2-233ENST00000557529 KCTD13Q8WZ19 329 aa13.12□□□□□ -0.31
SHMT2-233ENST00000557529 CRTAC1Q9NQ79 661 aa13.12□□□□□ -0.31
SHMT2-233ENST00000557529 DMGDHQ9UI17 866 aaKnown RBP13.12□□□□□ -0.31
SHMT2-233ENST00000557529 TIMM13Q9Y5L4 95 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-233ENST00000557529 TDRD15B5MCY1 1934 aaKnown RBP13.11□□□□□ -0.31
SHMT2-233ENST00000557529 C2CD4BA6NLJ0 364 aa13.11□□□□□ -0.31
SHMT2-233ENST00000557529 PAPSS1O43252 624 aaPredicted RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms