RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 KANSL3Q9P2N6 904 aa17.07■□□□□ 0.32
SHMT2-232ENST00000557487 STX18Q9P2W9 335 aaKnown RBP17.07■□□□□ 0.32
SHMT2-232ENST00000557487 ZNF212Q9UDV6 495 aa17.07■□□□□ 0.32
SHMT2-232ENST00000557487 PCDHGC3Q9UN70 934 aa17.07■□□□□ 0.32
SHMT2-232ENST00000557487 AGTPBP1Q9UPW5 1226 aa17.07■□□□□ 0.32
SHMT2-232ENST00000557487 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-232ENST00000557487 TESPA1A2RU30 521 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-232ENST00000557487 F8W8V4 182 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 LPXNO60711 386 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 NEK3P51956 506 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 ZBTB16Q05516 673 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 PRKD1Q15139 912 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-232ENST00000557487 KHDC1Q4VXA5 237 aaKnown RBP17.06■□□□□ 0.32
SHMT2-232ENST00000557487 XKR3Q5GH77 459 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 VSIG10LQ86VR7 867 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 RHPN2Q8IUC4 686 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 ANKMY2Q8IV38 441 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 RFWD2Q8NHY2 731 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 STMN2Q93045 179 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 FRMD8Q9BZ67 464 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-232ENST00000557487 RRAGCQ9HB90 399 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 NUB1Q9Y5A7 615 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 CTDP1Q9Y5B0 961 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-232ENST00000557487 IKBKGQ9Y6K9 419 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 C3orf70A6NLC5 250 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-232ENST00000557487 SIGLEC16A6NMB1 481 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 F8VP50 259 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 CDC25CP30307 473 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 POLR2BP30876 1174 aaKnown RBP17.06■□□□□ 0.32
SHMT2-232ENST00000557487 NAMPTP43490 491 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 NCOA4Q13772 614 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 HP1BP3Q5SSJ5 553 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-232ENST00000557487 SNX30Q5VWJ9 437 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 LMBRD2Q68DH5 695 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-232ENST00000557487 RSBN1LQ6PCB5 846 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-232ENST00000557487 CAPN12Q6ZSI9 719 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 CPXCR1Q8N123 301 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 FBXO36Q8NEA4 188 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 TSC22D3Q99576 134 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 ZNF341Q9BYN7 854 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 RAVER2Q9HCJ3 691 aaKnown RBP17.06■□□□□ 0.32
SHMT2-232ENST00000557487 SCOCQ9UIL1 159 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 DCTN4Q9UJW0 460 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 ASB3Q9Y575 518 aa17.06■□□□□ 0.32
SHMT2-232ENST00000557487 PSME4Q14997 1843 aa17.05■□□□□ 0.32
SHMT2-232ENST00000557487 A0A0G2JND7 137 aa17.05■□□□□ 0.32
SHMT2-232ENST00000557487 CLRN2A0PK11 232 aa17.05■□□□□ 0.32
SHMT2-232ENST00000557487 CFAP69A5D8W1 941 aa17.05■□□□□ 0.32
SHMT2-232ENST00000557487 H0Y3Z8 333 aa17.05■□□□□ 0.32
SHMT2-232ENST00000557487 MAGEC1O60732 1142 aa17.05■□□□□ 0.32
SHMT2-232ENST00000557487 PSMG1O95456 288 aa17.05■□□□□ 0.32
SHMT2-232ENST00000557487 ESRRAP11474 423 aaPredicted RBP17.05■□□□□ 0.32
SHMT2-232ENST00000557487 SSTR1P30872 391 aa17.05■□□□□ 0.32
SHMT2-232ENST00000557487 ETV4P43268 484 aa17.05■□□□□ 0.32
SHMT2-232ENST00000557487 RAP1GDS1P52306 607 aa17.05■□□□□ 0.32
SHMT2-232ENST00000557487 AP1B1Q10567 949 aa17.05■□□□□ 0.32
SHMT2-232ENST00000557487 RCN1Q15293 331 aa17.05■□□□□ 0.32
SHMT2-232ENST00000557487 GSTA3Q16772 222 aa17.05■□□□□ 0.32
SHMT2-232ENST00000557487 ACTL9Q8TC94 416 aa17.05■□□□□ 0.32
SHMT2-232ENST00000557487 TRAPPC9Q96Q05 1148 aa17.05■□□□□ 0.32
SHMT2-232ENST00000557487 CCDC28BQ9BUN5 200 aa17.05■□□□□ 0.32
SHMT2-232ENST00000557487 GLIS2Q9BZE0 524 aaPredicted RBP17.05■□□□□ 0.32
SHMT2-232ENST00000557487 YIPF3Q9GZM5 350 aa17.05■□□□□ 0.32
SHMT2-232ENST00000557487 MAF1Q9H063 256 aa17.05■□□□□ 0.32
SHMT2-232ENST00000557487 ARL8BQ9NVJ2 186 aa17.05■□□□□ 0.32
SHMT2-232ENST00000557487 SEPT9Q9UHD8 586 aaPredicted RBP17.05■□□□□ 0.32
SHMT2-232ENST00000557487 PTPRJQ12913 1337 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 A0A0B4J269 797 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 STAM2O75886 525 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 ASS1P00966 412 aaKnown RBP17.04■□□□□ 0.32
SHMT2-232ENST00000557487 DLDP09622 509 aaKnown RBP17.04■□□□□ 0.32
SHMT2-232ENST00000557487 TCF4P15884 667 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 RPL22P35268 128 aaKnown RBP17.04■□□□□ 0.32
SHMT2-232ENST00000557487 ACOT2P49753 483 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 OTUD4Q01804 1114 aaKnown RBP17.04■□□□□ 0.32
SHMT2-232ENST00000557487 PRKCEQ02156 737 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 TBCCQ15814 346 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 FNBP1LQ5T0N5 605 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 TMEM154Q6P9G4 183 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 SLC30A9Q6PML9 568 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 LRRC74BQ6ZQY2 392 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 TRMT1LQ7Z2T5 733 aaKnown RBP17.04■□□□□ 0.32
SHMT2-232ENST00000557487 MFN1Q8IWA4 741 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 MTMR14Q8NCE2 650 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 ZFAND2BQ8WV99 257 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 SLC44A1Q8WWI5 657 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 MRRFQ96E11 262 aaKnown RBP17.04■□□□□ 0.32
SHMT2-232ENST00000557487 TMEM120AQ9BXJ8 343 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 TMEM134Q9H6X4 195 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 PNPLA8Q9NP80 782 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 KCNK4Q9NYG8 393 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 DNAJB4Q9UDY4 337 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 ANGPTL2Q9UKU9 493 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 CNTNAP2Q9UHC6 1331 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 IQCA1LA6NCM1 817 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 RARBP10826 455 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 KCNA2P16389 499 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 PEX19P40855 299 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 YWHAEP62258 255 aaKnown RBP17.04■□□□□ 0.32
SHMT2-232ENST00000557487 OGDHQ02218 1023 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms