RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	ADGRD2	Q7Z7M1	963 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	SCN4B	Q8IWT1	228 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	TCEAL8	Q8IYN2	117 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	ANKRD52	Q8NB46	1076 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	ATAD1	Q8NBU5	361 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	KREMEN2	Q8NCW0	462 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	MSANTD4	Q8NCY6	345 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	AGPAT1	Q99943	283 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	PLEKHA4	Q9H4M7	779 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	HAUS4	Q9H6D7	363 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	PCDHGC3	Q9UN70	934 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	VWA8	A3KMH1	1905 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	IPO7	O95373	1038 aa	Known RBP	13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	CALCA	P01258	141 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	LRG1	P02750	347 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	SPATA31D3	P0C874	917 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	SKIL	P12757	684 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	TNFAIP3	P21580	790 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	CYP2F1	P24903	491 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	SSTR3	P32745	418 aa	Predicted RBP	13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	SNX16	P57768	344 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	CDK17	Q00537	523 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	TAF12	Q16514	161 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	TCEAL5	Q5H9L2	206 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	E4F1	Q66K89	784 aa	Predicted RBP	13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	PPP1R2P3	Q6NXS1	205 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	LLGL2	Q6P1M3	1020 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	CYP26C1	Q6V0L0	522 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	SPATA31D4	Q6ZUB0	917 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	CCDC186	Q7Z3E2	898 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	PASD1	Q8IV76	773 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	ELMOD1	Q8N336	334 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	MICALL1	Q8N3F8	863 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	DEFB123	Q8N688	67 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	TMEM35B	Q8NCS4	154 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	SLC7A14	Q8TBB6	771 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	HDAC7	Q8WUI4	952 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	SLC20A1	Q8WUM9	679 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	CCDC42	Q96M95	316 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	DUSP16	Q9BY84	665 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	RHOBTB2	Q9BYZ6	727 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	LHX5	Q9H2C1	402 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	IGFLR1	Q9H665	355 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	SYNC	Q9H7C4	482 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	MAN1C1	Q9NR34	630 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	DZANK1	Q9NVP4	752 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	EHD2	Q9NZN4	543 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	FBXW11	Q9UKB1	542 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	SLC27A5	Q9Y2P5	690 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904	HCFC2	Q9Y5Z7	792 aa		13.24	□□□□□ -0.29
ABCD4-223	ENST00000555904		F8VP50	259 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	NCK2	O43639	380 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	AKR1B10	O60218	316 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	C8A	P07357	584 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	HAPLN1	P10915	354 aa	Predicted RBP	13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	POU3F3	P20264	500 aa	Predicted RBP	13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	EPHB3	P54753	998 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	MAP3K7CL	P57077	242 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	PPM1L	Q5SGD2	360 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	LILRA6	Q6PI73	481 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	CLEC20A	Q6ZU45	233 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	ITIH5	Q86UX2	942 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	TTC30A	Q86WT1	665 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	CCDC112	Q8NEF3	446 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	UBA3	Q8TBC4	463 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	IPO4	Q8TEX9	1081 aa	Known RBP	13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	DDX1	Q92499	740 aa	Known RBP	13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	CASP10	Q92851	521 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	SECISBP2L	Q93073	1101 aa	Known RBP	13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	C8orf48	Q96LL4	319 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	CEP295NL	Q96MC4	621 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	BAG1	Q99933	345 aa	Predicted RBP	13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	ZSWIM1	Q9BR11	485 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	PNPLA8	Q9NP80	782 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	ST7	Q9NRC1	585 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	YIPF1	Q9Y548	306 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	INSL5	Q9Y5Q6	135 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	MTCH2	Q9Y6C9	303 aa		13.23	□□□□□ -0.29
ABCD4-223	ENST00000555904	CHD7	Q9P2D1	2997 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	SSU72P8	A0A1W2PR75	194 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	XPO1	O14980	1071 aa	Known RBP	13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	SEC24A	O95486	1093 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	FOSL2	P15408	326 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	EPCAM	P16422	314 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	EIF4A3	P38919	411 aa	Known RBP	13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	NSF	P46459	744 aa	Known RBP	13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	FMO1	Q01740	532 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	PDE4C	Q08493	712 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	TWF1	Q12792	350 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	HGSNAT	Q68CP4	663 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	DENND1B	Q6P3S1	775 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	WDR59	Q6PJI9	974 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	PAQR9	Q6ZVX9	377 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904		Q7L0L9	218 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	ZNF571	Q7Z3V5	609 aa	Predicted RBP	13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	TMTC1	Q8IUR5	882 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	SIX6OS1	Q8N1H7	587 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	TTC9B	Q8N6N2	239 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	EFHB	Q8N7U6	833 aa		13.22	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms