RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 CLEC1BQ9P126 229 aa11.59□□□□□ -0.55
SHMT2-218ENST00000555213 GTF3C4Q9UKN8 822 aa11.59□□□□□ -0.55
SHMT2-218ENST00000555213 MYO6Q9UM54 1294 aa11.59□□□□□ -0.55
SHMT2-218ENST00000555213 REXO2Q9Y3B8 237 aaKnown RBP11.59□□□□□ -0.55
SHMT2-218ENST00000555213 YIPF1Q9Y548 306 aa11.59□□□□□ -0.55
SHMT2-218ENST00000555213 INSL5Q9Y5Q6 135 aa11.59□□□□□ -0.55
SHMT2-218ENST00000555213 TRANK1O15050 2925 aa11.59□□□□□ -0.55
SHMT2-218ENST00000555213 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-218ENST00000555213 A0A0U1RQJ8 604 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 MYBPHLA2RUH7 354 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 H3BQ06 376 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-218ENST00000555213 ZNF263O14978 683 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 HCRTO43612 131 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 POU2F2P09086 479 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 KRT5P13647 590 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 ANXA13P27216 316 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 EPHB3P54753 998 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 RPL10AP62906 217 aaKnown RBP11.58□□□□□ -0.56
SHMT2-218ENST00000555213 DUSP4Q13115 394 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 SMAD4Q13485 552 aaKnown RBP11.58□□□□□ -0.56
SHMT2-218ENST00000555213 DRAP1Q14919 205 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-218ENST00000555213 CLUL1Q15846 466 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 LEXMQ3ZCV2 418 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 RARS2Q5T160 578 aaKnown RBP11.58□□□□□ -0.56
SHMT2-218ENST00000555213 FAM171BQ6P995 826 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 TMEM270Q6UE05 265 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 ACOT1Q86TX2 421 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 ITIH5Q86UX2 942 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 LRRTM3Q86VH5 581 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 GPIHBP1Q8IV16 184 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 ATAD1Q8NBU5 361 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 SMRP1Q8NCR6 262 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 ATRIPQ8WXE1 791 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 SMG7Q92540 1137 aaKnown RBP11.58□□□□□ -0.56
SHMT2-218ENST00000555213 PCED1BQ96HM7 432 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 NECTIN4Q96NY8 510 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 PKMYT1Q99640 499 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 SYT11Q9BT88 431 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 MED10Q9BTT4 135 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 ADAM7Q9H2U9 754 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 DPEP3Q9H4B8 488 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 CRTAC1Q9NQ79 661 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 HMGXB4Q9UGU5 601 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 PCDHB4Q9Y5E5 795 aa11.58□□□□□ -0.56
SHMT2-218ENST00000555213 EPN1Q9Y6I3 576 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-218ENST00000555213 CCDC195A0A1B0GUA6 201 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 TRIM66O15016 1216 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 ATP2C2O75185 946 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 LCA5LO95447 670 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 PAEPP09466 180 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 TPM1P09493 284 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 PNMA6AP0CW24 399 aaPredicted RBP11.57□□□□□ -0.56
SHMT2-218ENST00000555213 CD19P15391 556 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 LTBRP36941 435 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 PRKCIP41743 596 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 MTHFRP42898 656 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 MAGEA11P43364 429 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 SLC8A3P57103 927 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 DLX2Q07687 328 aaPredicted RBP11.57□□□□□ -0.56
SHMT2-218ENST00000555213 TWF1Q12792 350 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 ORC1Q13415 861 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 RAPGEF1Q13905 1077 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 TAF12Q16514 161 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 ZNF394Q53GI3 561 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 ATAT1Q5SQI0 421 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 SFMBT2Q5VUG0 894 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 VSTM1Q6UX27 236 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 TMC5Q6UXY8 1006 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 CACNA2D4Q7Z3S7 1137 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 CCAR2Q8N163 923 aaKnown RBP11.57□□□□□ -0.56
SHMT2-218ENST00000555213 CRYBG2Q8N1P7 616 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 RBBP8NLQ8NC74 664 aaPredicted RBP11.57□□□□□ -0.56
SHMT2-218ENST00000555213 ZNF397Q8NF99 534 aaPredicted RBP11.57□□□□□ -0.56
SHMT2-218ENST00000555213 SMARCD1Q96GM5 515 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 TMEM176AQ96HP8 235 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 MSLNLQ96KJ4 702 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 HEXIM2Q96MH2 286 aaKnown RBP11.57□□□□□ -0.56
SHMT2-218ENST00000555213 APOL5Q9BWW9 433 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 RHOBTB2Q9BYZ6 727 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 PRKD2Q9BZL6 878 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 NUCKS1Q9H1E3 243 aaKnown RBP11.57□□□□□ -0.56
SHMT2-218ENST00000555213 NHEJ1Q9H9Q4 299 aaPredicted RBP11.57□□□□□ -0.56
SHMT2-218ENST00000555213 KRT82Q9NSB4 513 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 FAM49BQ9NUQ9 324 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 TMLHEQ9NVH6 421 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 SLC27A5Q9Y2P5 690 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 ADGRG1Q9Y653 693 aa11.57□□□□□ -0.56
SHMT2-218ENST00000555213 F8VZ95 297 aa11.56□□□□□ -0.56
SHMT2-218ENST00000555213 CCL16O15467 120 aa11.56□□□□□ -0.56
SHMT2-218ENST00000555213 RFPL2O75678 378 aa11.56□□□□□ -0.56
SHMT2-218ENST00000555213 SEC24AO95486 1093 aa11.56□□□□□ -0.56
SHMT2-218ENST00000555213 ABL1P00519 1130 aa11.56□□□□□ -0.56
SHMT2-218ENST00000555213 FAM200BP0CF97 657 aa11.56□□□□□ -0.56
SHMT2-218ENST00000555213 HAPLN1P10915 354 aaPredicted RBP11.56□□□□□ -0.56
SHMT2-218ENST00000555213 ACO1P21399 889 aaKnown RBP11.56□□□□□ -0.56
SHMT2-218ENST00000555213 CLCN1P35523 988 aa11.56□□□□□ -0.56
SHMT2-218ENST00000555213 SOX5P35711 763 aa11.56□□□□□ -0.56
SHMT2-218ENST00000555213 EIF4A3P38919 411 aaKnown RBP11.56□□□□□ -0.56
SHMT2-218ENST00000555213 USP8P40818 1118 aa11.56□□□□□ -0.56
SHMT2-218ENST00000555213 PLXNA3P51805 1871 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms