RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 SEMA4CQ9C0C4 833 aa6.41□□□□□ -1.38
VRK1-203ENST00000555067 TCF7L1Q9HCS4 588 aa6.41□□□□□ -1.38
VRK1-203ENST00000555067 ARHGEF3Q9NR81 526 aa6.41□□□□□ -1.38
VRK1-203ENST00000555067 MAP3K20Q9NYL2 800 aaKnown RBP6.41□□□□□ -1.38
VRK1-203ENST00000555067 ABCF2Q9UG63 623 aa6.41□□□□□ -1.38
VRK1-203ENST00000555067 AGAP1Q9UPQ3 857 aa6.41□□□□□ -1.38
VRK1-203ENST00000555067 TARM1B6A8C7 271 aa6.4□□□□□ -1.38
VRK1-203ENST00000555067 VPS4BO75351 444 aa6.4□□□□□ -1.38
VRK1-203ENST00000555067 TCEA3O75764 348 aa6.4□□□□□ -1.38
VRK1-203ENST00000555067 SNUPNO95149 360 aaKnown RBP6.4□□□□□ -1.38
VRK1-203ENST00000555067 U2AF1L5P0DN76 240 aaPredicted RBP6.4□□□□□ -1.38
VRK1-203ENST00000555067 PF4V1P10720 104 aa6.4□□□□□ -1.38
VRK1-203ENST00000555067 NDUFB7P17568 137 aa6.4□□□□□ -1.38
VRK1-203ENST00000555067 CHRM3P20309 590 aa6.4□□□□□ -1.38
VRK1-203ENST00000555067 PCSK6P29122 969 aa6.4□□□□□ -1.38
VRK1-203ENST00000555067 GCLCP48506 637 aaPredicted RBP6.4□□□□□ -1.38
VRK1-203ENST00000555067 U2AF1Q01081 240 aaKnown RBP eCLIP6.4□□□□□ -1.38
VRK1-203ENST00000555067 TFF2Q03403 129 aa6.4□□□□□ -1.38
VRK1-203ENST00000555067 GRM3Q14832 879 aa6.4□□□□□ -1.38
VRK1-203ENST00000555067 HEATR3Q7Z4Q2 680 aa6.4□□□□□ -1.38
VRK1-203ENST00000555067 ZNF804AQ7Z570 1209 aa6.4□□□□□ -1.38
VRK1-203ENST00000555067 USP37Q86T82 979 aa6.4□□□□□ -1.38
VRK1-203ENST00000555067 PAF1Q8N7H5 531 aa6.4□□□□□ -1.38
VRK1-203ENST00000555067 WASF1Q92558 559 aa6.4□□□□□ -1.38
VRK1-203ENST00000555067 TNPO1Q92973 898 aaKnown RBP6.4□□□□□ -1.38
VRK1-203ENST00000555067 MRPL46Q9H2W6 279 aaKnown RBP6.4□□□□□ -1.38
VRK1-203ENST00000555067 MRPS18AQ9NVS2 196 aaKnown RBP6.4□□□□□ -1.38
VRK1-203ENST00000555067 ANAPC4Q9UJX5 808 aa6.4□□□□□ -1.38
VRK1-203ENST00000555067 FAM50BQ9Y247 325 aa6.4□□□□□ -1.38
VRK1-203ENST00000555067 ANKRD6Q9Y2G4 727 aa6.4□□□□□ -1.38
VRK1-203ENST00000555067 A0A0U1RQG5 324 aaPredicted RBP6.39□□□□□ -1.39
VRK1-203ENST00000555067 ANO9A1A5B4 782 aa6.39□□□□□ -1.39
VRK1-203ENST00000555067 M0QYG6 137 aa6.39□□□□□ -1.39
VRK1-203ENST00000555067 FTLP02792 175 aaPredicted RBP6.39□□□□□ -1.39
VRK1-203ENST00000555067 PDCP20941 246 aa6.39□□□□□ -1.39
VRK1-203ENST00000555067 PHKA1P46020 1223 aa6.39□□□□□ -1.39
VRK1-203ENST00000555067 TRAPPC10P48553 1259 aa6.39□□□□□ -1.39
VRK1-203ENST00000555067 TOB1P50616 345 aaPredicted RBP6.39□□□□□ -1.39
VRK1-203ENST00000555067 GBX1Q14549 363 aa6.39□□□□□ -1.39
VRK1-203ENST00000555067 SFRP4Q6FHJ7 346 aaPredicted RBP6.39□□□□□ -1.39
VRK1-203ENST00000555067 ANKRD16Q6P6B7 361 aa6.39□□□□□ -1.39
VRK1-203ENST00000555067 EPM2AIP1Q7L775 607 aaPredicted RBP6.39□□□□□ -1.39
VRK1-203ENST00000555067 CPA6Q8N4T0 437 aa6.39□□□□□ -1.39
VRK1-203ENST00000555067 VGLL2Q8N8G2 317 aa6.39□□□□□ -1.39
VRK1-203ENST00000555067 TBC1D5Q92609 795 aa6.39□□□□□ -1.39
VRK1-203ENST00000555067 ELAC2Q9BQ52 826 aaKnown RBP6.39□□□□□ -1.39
VRK1-203ENST00000555067 TMX4Q9H1E5 349 aaPredicted RBP6.39□□□□□ -1.39
VRK1-203ENST00000555067 ANLNQ9NQW6 1124 aa6.39□□□□□ -1.39
VRK1-203ENST00000555067 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.39□□□□□ -1.39
VRK1-203ENST00000555067 LMBRD1Q9NUN5 540 aa6.39□□□□□ -1.39
VRK1-203ENST00000555067 DKK3Q9UBP4 350 aa6.39□□□□□ -1.39
VRK1-203ENST00000555067 SERGEFQ9UGK8 458 aa6.39□□□□□ -1.39
VRK1-203ENST00000555067 SWAP70Q9UH65 585 aa6.39□□□□□ -1.39
VRK1-203ENST00000555067 DDX20Q9UHI6 824 aaKnown RBP6.39□□□□□ -1.39
VRK1-203ENST00000555067 PNMA8BQ9ULN7 279 aaPredicted RBP6.39□□□□□ -1.39
VRK1-203ENST00000555067 ZNF804BA4D1E1 1349 aa6.39□□□□□ -1.39
VRK1-203ENST00000555067 JTBO76095 146 aa6.38□□□□□ -1.39
VRK1-203ENST00000555067 ALDH9A1P49189 494 aa6.38□□□□□ -1.39
VRK1-203ENST00000555067 GALEQ14376 348 aa6.38□□□□□ -1.39
VRK1-203ENST00000555067 SAFBQ15424 915 aaKnown RBP eCLIP6.38□□□□□ -1.39
VRK1-203ENST00000555067 ARHGAP29Q52LW3 1261 aa6.38□□□□□ -1.39
VRK1-203ENST00000555067 TMEM240Q5SV17 173 aa6.38□□□□□ -1.39
VRK1-203ENST00000555067 VPS53Q5VIR6 699 aa6.38□□□□□ -1.39
VRK1-203ENST00000555067 FAM160B1Q5W0V3 765 aa6.38□□□□□ -1.39
VRK1-203ENST00000555067 KRBA2Q6ZNG9 492 aa6.38□□□□□ -1.39
VRK1-203ENST00000555067 USP45Q70EL2 814 aa6.38□□□□□ -1.39
VRK1-203ENST00000555067 SLC29A4Q7RTT9 530 aa6.38□□□□□ -1.39
VRK1-203ENST00000555067 PRR18Q8N4B5 295 aa6.38□□□□□ -1.39
VRK1-203ENST00000555067 ENAHQ8N8S7 591 aaPredicted RBP6.38□□□□□ -1.39
VRK1-203ENST00000555067 VPS37AQ8NEZ2 397 aa6.38□□□□□ -1.39
VRK1-203ENST00000555067 LZTS1Q9Y250 596 aa6.38□□□□□ -1.39
VRK1-203ENST00000555067 FRMPD2Q68DX3 1309 aaPredicted RBP6.37□□□□□ -1.39
VRK1-203ENST00000555067 TLR5O60602 858 aa6.37□□□□□ -1.39
VRK1-203ENST00000555067 TYRP14679 529 aa6.37□□□□□ -1.39
VRK1-203ENST00000555067 PHKG2P15735 406 aa6.37□□□□□ -1.39
VRK1-203ENST00000555067 SETQ01105 290 aaPredicted RBP6.37□□□□□ -1.39
VRK1-203ENST00000555067 EIF2B5Q13144 721 aaKnown RBP6.37□□□□□ -1.39
VRK1-203ENST00000555067 AARS2Q5JTZ9 985 aaKnown RBP6.37□□□□□ -1.39
VRK1-203ENST00000555067 ANO1Q5XXA6 986 aa6.37□□□□□ -1.39
VRK1-203ENST00000555067 ZNF782Q6ZMW2 699 aaPredicted RBP6.37□□□□□ -1.39
VRK1-203ENST00000555067 WDR53Q7Z5U6 358 aaPredicted RBP6.37□□□□□ -1.39
VRK1-203ENST00000555067 PCGF5Q86SE9 256 aa6.37□□□□□ -1.39
VRK1-203ENST00000555067 DTX2Q86UW9 622 aa6.37□□□□□ -1.39
VRK1-203ENST00000555067 FAM46DQ8NEK8 389 aa6.37□□□□□ -1.39
VRK1-203ENST00000555067 LRGUKQ96M69 825 aa6.37□□□□□ -1.39
VRK1-203ENST00000555067 SERHLQ9NQF3 203 aa6.37□□□□□ -1.39
VRK1-203ENST00000555067 SH2B3Q9UQQ2 575 aa6.37□□□□□ -1.39
VRK1-203ENST00000555067 PPM1DO15297 605 aa6.36□□□□□ -1.39
VRK1-203ENST00000555067 FAM163BP0C2L3 166 aa6.36□□□□□ -1.39
VRK1-203ENST00000555067 PIM1P11309 404 aaPredicted RBP6.36□□□□□ -1.39
VRK1-203ENST00000555067 JUPP14923 745 aa6.36□□□□□ -1.39
VRK1-203ENST00000555067 CERS1P27544 350 aa6.36□□□□□ -1.39
VRK1-203ENST00000555067 LOXL3P58215 753 aa6.36□□□□□ -1.39
VRK1-203ENST00000555067 SSBP2P81877 361 aaPredicted RBP6.36□□□□□ -1.39
VRK1-203ENST00000555067 GTF2H3Q13889 308 aa6.36□□□□□ -1.39
VRK1-203ENST00000555067 MAPRE1Q15691 268 aaKnown RBP6.36□□□□□ -1.39
VRK1-203ENST00000555067 TMEM119Q4V9L6 283 aa6.36□□□□□ -1.39
VRK1-203ENST00000555067 SLC44A4Q53GD3 710 aa6.36□□□□□ -1.39
VRK1-203ENST00000555067 ICE2Q659A1 982 aa6.36□□□□□ -1.39
VRK1-203ENST00000555067 TMEM108Q6UXF1 575 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms