RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 ABCB6Q9NP58 842 aa11.34□□□□□ -0.59
SHMT2-215ENST00000554656 TDP1Q9NUW8 608 aa11.34□□□□□ -0.59
SHMT2-215ENST00000554656 PANK4Q9NVE7 773 aa11.34□□□□□ -0.59
SHMT2-215ENST00000554656 KIAA1468Q9P260 1216 aa11.34□□□□□ -0.59
SHMT2-215ENST00000554656 GTF3C4Q9UKN8 822 aa11.34□□□□□ -0.59
SHMT2-215ENST00000554656 ITGA11Q9UKX5 1188 aa11.34□□□□□ -0.59
SHMT2-215ENST00000554656 MAGED2Q9UNF1 606 aaPredicted RBP11.34□□□□□ -0.59
SHMT2-215ENST00000554656 EPG5Q9HCE0 2579 aa11.34□□□□□ -0.59
SHMT2-215ENST00000554656 ACACBO00763 2458 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 DCDC2BA2VCK2 349 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 POLR2DO15514 142 aaKnown RBP11.33□□□□□ -0.6
SHMT2-215ENST00000554656 ACTN4O43707 911 aaKnown RBP11.33□□□□□ -0.6
SHMT2-215ENST00000554656 HUS1O60921 280 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 ATP2C2O75185 946 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 RETP07949 1114 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 CSH1P0DML2 217 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 CSH2P0DML3 217 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 DDX6P26196 483 aaKnown RBP eCLIP11.33□□□□□ -0.6
SHMT2-215ENST00000554656 HOXA6P31267 233 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 USP4Q13107 963 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 ALCAMQ13740 583 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 RUNX3Q13761 415 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 E2F4Q16254 413 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 TAF12Q16514 161 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 NFE2Q16621 373 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-215ENST00000554656 STX1AQ16623 288 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 TMEM196Q5HYL7 178 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 MON1AQ86VX9 555 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 WDR5BQ86VZ2 330 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 LONP2Q86WA8 852 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 CBWD2Q8IUF1 395 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 ADGRF2Q8IZF7 708 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 SYCP3Q8IZU3 236 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 TMEM86AQ8N2M4 240 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 FAM160A2Q8N612 972 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-215ENST00000554656 NOC3LQ8WTT2 800 aaKnown RBP11.33□□□□□ -0.6
SHMT2-215ENST00000554656 EZH1Q92800 747 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-215ENST00000554656 TRMT2BQ96GJ1 504 aaKnown RBP11.33□□□□□ -0.6
SHMT2-215ENST00000554656 INTS13Q9NVM9 706 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 ANO10Q9NW15 660 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 CDV3Q9UKY7 258 aaKnown RBP11.33□□□□□ -0.6
SHMT2-215ENST00000554656 RAB23Q9ULC3 237 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 NME7Q9Y5B8 376 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 PCDHB13Q9Y5F0 798 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 SNX9Q9Y5X1 595 aa11.33□□□□□ -0.6
SHMT2-215ENST00000554656 KMT2BQ9UMN6 2715 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-215ENST00000554656 CNOT1A5YKK6 2376 aaKnown RBP11.33□□□□□ -0.6
SHMT2-215ENST00000554656 MYOFQ9NZM1 2061 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 PRR5-ARHGAP8B1AHC4 643 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 TULP1O00294 542 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-215ENST00000554656 TRDMT1O14717 391 aaKnown RBP11.32□□□□□ -0.6
SHMT2-215ENST00000554656 LRP3O75074 770 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 LDHAP00338 332 aaKnown RBP11.32□□□□□ -0.6
SHMT2-215ENST00000554656 EGFP01133 1207 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 MYL1P05976 194 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 KRT19P08727 400 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 LMO2P25791 158 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 DEKP35659 375 aaKnown RBP11.32□□□□□ -0.6
SHMT2-215ENST00000554656 AVPR1AP37288 418 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 PXNP49023 591 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-215ENST00000554656 PSMC1P62191 440 aaKnown RBP11.32□□□□□ -0.6
SHMT2-215ENST00000554656 RBP5P82980 135 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 ARHGAP8P85298 464 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 ZNF268Q14587 947 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-215ENST00000554656 ZNF77Q15935 545 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 CFAP221Q4G0U5 840 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 FAM171BQ6P995 826 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 CEP57L1Q8IYX8 460 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 GPD1LQ8N335 351 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 SYNPOQ8N3V7 929 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 TOP6BLQ8N6T0 577 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 TRIML1Q8N9V2 468 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 CACTINQ8WUQ7 758 aaKnown RBP11.32□□□□□ -0.6
SHMT2-215ENST00000554656 MRPS31Q92665 395 aaKnown RBP11.32□□□□□ -0.6
SHMT2-215ENST00000554656 MYRFLQ96LU7 910 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 CYP2S1Q96SQ9 504 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 KIF9Q9HAQ2 790 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 CRTAC1Q9NQ79 661 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 SEMA4GQ9NTN9 838 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 KBTBD4Q9NVX7 518 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 THG1LQ9NWX6 298 aaKnown RBP11.32□□□□□ -0.6
SHMT2-215ENST00000554656 GCNT4Q9P109 453 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 ZMYM5Q9UJ78 669 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 LAMA1P25391 3075 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 CACNA1BQ00975 2339 aa11.32□□□□□ -0.6
SHMT2-215ENST00000554656 CHD8Q9HCK8 2581 aa11.31□□□□□ -0.6
SHMT2-215ENST00000554656 MAP1BP46821 2468 aaKnown RBP11.31□□□□□ -0.6
SHMT2-215ENST00000554656 C2orf78A6NCI8 922 aa11.31□□□□□ -0.6
SHMT2-215ENST00000554656 GDF9O60383 454 aa11.31□□□□□ -0.6
SHMT2-215ENST00000554656 SMC2O95347 1197 aa11.31□□□□□ -0.6
SHMT2-215ENST00000554656 TMEM191BP0C7N4 346 aa11.31□□□□□ -0.6
SHMT2-215ENST00000554656 RPL10AP62906 217 aaKnown RBP11.31□□□□□ -0.6
SHMT2-215ENST00000554656 ZXDBP98169 803 aa11.31□□□□□ -0.6
SHMT2-215ENST00000554656 MYL7Q01449 175 aa11.31□□□□□ -0.6
SHMT2-215ENST00000554656 MTF1Q14872 753 aa11.31□□□□□ -0.6
SHMT2-215ENST00000554656 PRR23CQ6ZRP0 262 aa11.31□□□□□ -0.6
SHMT2-215ENST00000554656 EPM2AIP1Q7L775 607 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-215ENST00000554656 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-215ENST00000554656 SPATA20Q8TB22 786 aa11.31□□□□□ -0.6
SHMT2-215ENST00000554656 SPATA18Q8TC71 538 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms