RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 NRG4Q8WWG1 115 aa18.38■□□□□ 0.53
SYNE3-202ENST00000553340 C10orf88Q9H8K7 445 aa18.38■□□□□ 0.53
SYNE3-202ENST00000553340 GINM1Q9NU53 330 aa18.38■□□□□ 0.53
SYNE3-202ENST00000553340 SCOCQ9UIL1 159 aa18.38■□□□□ 0.53
SYNE3-202ENST00000553340 LTBP4Q8N2S1 1624 aa18.38■□□□□ 0.53
SYNE3-202ENST00000553340 YDJCA8MPS7 323 aa18.38■□□□□ 0.53
SYNE3-202ENST00000553340 CST8O60676 142 aa18.38■□□□□ 0.53
SYNE3-202ENST00000553340 PSAPP07602 524 aa18.38■□□□□ 0.53
SYNE3-202ENST00000553340 PPP1R15BQ5SWA1 713 aa18.38■□□□□ 0.53
SYNE3-202ENST00000553340 TAB3Q8N5C8 712 aaPredicted RBP18.38■□□□□ 0.53
SYNE3-202ENST00000553340 TTC17Q96AE7 1141 aa18.38■□□□□ 0.53
SYNE3-202ENST00000553340 APOPT1Q96IL0 206 aa18.38■□□□□ 0.53
SYNE3-202ENST00000553340 TMEM39BQ9GZU3 492 aa18.38■□□□□ 0.53
SYNE3-202ENST00000553340 STX18Q9P2W9 335 aaKnown RBP18.38■□□□□ 0.53
SYNE3-202ENST00000553340 XPO7Q9UIA9 1087 aaKnown RBP18.38■□□□□ 0.53
SYNE3-202ENST00000553340 ASB3Q9Y575 518 aa18.38■□□□□ 0.53
SYNE3-202ENST00000553340 C3orf70A6NLC5 250 aaPredicted RBP18.37■□□□□ 0.53
SYNE3-202ENST00000553340 TBX10O75333 385 aa18.37■□□□□ 0.53
SYNE3-202ENST00000553340 ETV4P43268 484 aa18.37■□□□□ 0.53
SYNE3-202ENST00000553340 PSMC4P43686 418 aa18.37■□□□□ 0.53
SYNE3-202ENST00000553340 PTK7Q13308 1070 aa18.37■□□□□ 0.53
SYNE3-202ENST00000553340 MTM1Q13496 603 aa18.37■□□□□ 0.53
SYNE3-202ENST00000553340 OR5B17Q8NGF7 314 aa18.37■□□□□ 0.53
SYNE3-202ENST00000553340 PRR11Q96HE9 360 aaPredicted RBP18.37■□□□□ 0.53
SYNE3-202ENST00000553340 ZBTB45Q96K62 511 aaPredicted RBP18.37■□□□□ 0.53
SYNE3-202ENST00000553340 FAM111AQ96PZ2 611 aa18.37■□□□□ 0.53
SYNE3-202ENST00000553340 MSTO1Q9BUK6 570 aa18.37■□□□□ 0.53
SYNE3-202ENST00000553340 ZNF518BQ9C0D4 1074 aa18.37■□□□□ 0.53
SYNE3-202ENST00000553340 HAPLN2Q9GZV7 340 aa18.37■□□□□ 0.53
SYNE3-202ENST00000553340 PAPOLBQ9NRJ5 636 aaKnown RBP18.37■□□□□ 0.53
SYNE3-202ENST00000553340 CTDP1Q9Y5B0 961 aaPredicted RBP18.37■□□□□ 0.53
SYNE3-202ENST00000553340 ARID2Q68CP9 1835 aa18.37■□□□□ 0.53
SYNE3-202ENST00000553340 H0YIN7 160 aa18.37■□□□□ 0.53
SYNE3-202ENST00000553340 TMEM63AO94886 807 aa18.37■□□□□ 0.53
SYNE3-202ENST00000553340 RFC5P40937 340 aa18.37■□□□□ 0.53
SYNE3-202ENST00000553340 PAPOLAP51003 745 aaKnown RBP18.37■□□□□ 0.53
SYNE3-202ENST00000553340 NEK3P51956 506 aa18.37■□□□□ 0.53
SYNE3-202ENST00000553340 PRKCEQ02156 737 aa18.37■□□□□ 0.53
SYNE3-202ENST00000553340 BBS12Q6ZW61 710 aa18.37■□□□□ 0.53
SYNE3-202ENST00000553340 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.37■□□□□ 0.53
SYNE3-202ENST00000553340 UCMAQ8WVF2 138 aa18.37■□□□□ 0.53
SYNE3-202ENST00000553340 GPRASP2Q96D09 838 aa18.37■□□□□ 0.53
SYNE3-202ENST00000553340 OXNAD1Q96HP4 312 aaPredicted RBP18.37■□□□□ 0.53
SYNE3-202ENST00000553340 WDR81Q562E7 1941 aa18.37■□□□□ 0.53
SYNE3-202ENST00000553340 A8MXQ7 604 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 MAFGO15525 162 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 IL1BP01584 269 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 KRT7P08729 469 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 BGNP21810 368 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 AP1B1Q10567 949 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 SPDYE2Q495Y8 402 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 ZBTB41Q5SVQ8 909 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 XRRA1Q6P2D8 792 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 PDCD7Q8N8D1 485 aaKnown RBP18.36■□□□□ 0.53
SYNE3-202ENST00000553340 WDR60Q8WVS4 1066 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 LPAR1Q92633 364 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 ZWILCHQ9H900 591 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 TCRBV7S3A2A0A539 114 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 INHBAP08476 426 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 RARBP10826 455 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 MYL2P10916 166 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 GNAT1P11488 350 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 BRD2P25440 801 aaKnown RBP18.36■□□□□ 0.53
SYNE3-202ENST00000553340 CCND2P30279 289 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 MTERF2Q49AM1 385 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 AP1ARQ63HQ0 302 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 STYK1Q6J9G0 422 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 ZC3H18Q86VM9 953 aaKnown RBP18.36■□□□□ 0.53
SYNE3-202ENST00000553340 UBR7Q8N806 425 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 DTX3LQ8TDB6 740 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 SERAC1Q96JX3 654 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 METTL5Q9NRN9 209 aaKnown RBP18.36■□□□□ 0.53
SYNE3-202ENST00000553340 ZNF212Q9UDV6 495 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 POLIQ9UNA4 740 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 CHMP2BQ9UQN3 213 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 K7ERI5 159 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 FCHO1O14526 889 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 STAM2O75886 525 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 PSMA2P25787 234 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 PGM1P36871 562 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 BASP1P80723 227 aaKnown RBP18.36■□□□□ 0.53
SYNE3-202ENST00000553340 SP4Q02446 784 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 SLC18A2Q05940 514 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 SMTNL2Q2TAL5 461 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 GPAT2Q6NUI2 795 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 VSIG10LQ86VR7 867 aa18.36■□□□□ 0.53
SYNE3-202ENST00000553340 MAP3K7O43318 606 aa18.35■□□□□ 0.53
SYNE3-202ENST00000553340 ONECUT3O60422 494 aaPredicted RBP18.35■□□□□ 0.53
SYNE3-202ENST00000553340 PIGRP01833 764 aa18.35■□□□□ 0.53
SYNE3-202ENST00000553340 GSTA2P09210 222 aa18.35■□□□□ 0.53
SYNE3-202ENST00000553340 ZNF200P98182 395 aaPredicted RBP18.35■□□□□ 0.53
SYNE3-202ENST00000553340 EMC2Q15006 297 aa18.35■□□□□ 0.53
SYNE3-202ENST00000553340 RBBP5Q15291 538 aaKnown RBP18.35■□□□□ 0.53
SYNE3-202ENST00000553340 HADHQ16836 314 aaKnown RBP18.35■□□□□ 0.53
SYNE3-202ENST00000553340 CYP4A22Q5TCH4 519 aa18.35■□□□□ 0.53
SYNE3-202ENST00000553340 FAM91A1Q658Y4 838 aa18.35■□□□□ 0.53
SYNE3-202ENST00000553340 OR52E8Q6IFG1 317 aa18.35■□□□□ 0.53
SYNE3-202ENST00000553340 CCDC60Q8IWA6 550 aaPredicted RBP18.35■□□□□ 0.53
SYNE3-202ENST00000553340 THNSL1Q8IYQ7 743 aa18.35■□□□□ 0.53
SYNE3-202ENST00000553340 DEPTORQ8TB45 409 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms