RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 COLGALT2Q8IYK4 626 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 MDGA1Q8NFP4 955 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 MARS2Q96GW9 593 aaKnown RBP5.87□□□□□ -1.47
SCFD1-209ENST00000553280 TRIB1Q96RU8 372 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 ZHX3Q9H4I2 956 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 SAYSD1Q9NPB0 183 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 PLA2G3Q9NZ20 509 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 DNMT3BQ9UBC3 853 aaKnown RBP5.87□□□□□ -1.47
SCFD1-209ENST00000553280 FBXO9Q9UK97 447 aaPredicted RBP5.87□□□□□ -1.47
SCFD1-209ENST00000553280 SHOC2Q9UQ13 582 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 CRYL1Q9Y2S2 319 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 MTO1Q9Y2Z2 717 aaKnown RBP5.87□□□□□ -1.47
SCFD1-209ENST00000553280 A0A0B4J269 797 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 RRP9O43818 475 aaKnown RBP5.86□□□□□ -1.47
SCFD1-209ENST00000553280 NTSR2O95665 410 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 CKMT1AP12532 417 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 ZNF20P17024 532 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 CST5P28325 142 aaPredicted RBP5.86□□□□□ -1.47
SCFD1-209ENST00000553280 LRPAP1P30533 357 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 MAN1A1P33908 653 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 EPHB4P54760 987 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 SATB1Q01826 763 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 ZNF844Q08AG5 666 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 NSUN2Q08J23 767 aaKnown RBP eCLIP5.86□□□□□ -1.47
SCFD1-209ENST00000553280 EFR3AQ14156 821 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 FAXCQ5TGI0 409 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 METRNLQ641Q3 311 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 KLHL17Q6TDP4 642 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 TAX1BP1Q86VP1 789 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 ZNF280BQ86YH2 543 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 SYT12Q8IV01 421 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 POC1BQ8TC44 478 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 RUBCNQ92622 972 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 RSC1A1Q92681 617 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 TMEM176AQ96HP8 235 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 LRIG1Q96JA1 1093 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 PHACTR3Q96KR7 559 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 LRRC37BQ96QE4 947 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 PNKPQ96T60 521 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 DDX23Q9BUQ8 820 aaKnown RBP5.86□□□□□ -1.47
SCFD1-209ENST00000553280 SLC46A2Q9BY10 475 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 KRTAP17-1Q9BYP8 105 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 KRTAP3-1Q9BYR8 98 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 TTYH3Q9C0H2 523 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 REXO4Q9GZR2 422 aaKnown RBP5.86□□□□□ -1.47
SCFD1-209ENST00000553280 VSX1Q9NZR4 365 aaPredicted RBP5.86□□□□□ -1.47
SCFD1-209ENST00000553280 SWAP70Q9UH65 585 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 SH3BP1Q9Y3L3 701 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 RAD54BQ9Y620 910 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 HS3ST4Q9Y661 456 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 CDY1Q9Y6F8 540 aa5.86□□□□□ -1.47
SCFD1-209ENST00000553280 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 OR2W5A6NFC9 320 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 GPR42O15529 346 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 PECAM1P16284 738 aaPredicted RBP5.85□□□□□ -1.47
SCFD1-209ENST00000553280 BDNFP23560 247 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 SLC5A2P31639 672 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 DGKEP52429 567 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 PNLIPRP1P54315 467 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 GEMIN4P57678 1058 aaKnown RBP5.85□□□□□ -1.47
SCFD1-209ENST00000553280 KCNAB1Q14722 419 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 ICAM4Q14773 271 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 ELAVL1Q15717 326 aaKnown RBP5.85□□□□□ -1.47
SCFD1-209ENST00000553280 FAM110CQ1W6H9 321 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 ADCK5Q3MIX3 580 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 ZIK1Q3SY52 487 aaPredicted RBP5.85□□□□□ -1.47
SCFD1-209ENST00000553280 MANEALQ5VSG8 457 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 TAPT1Q6NXT6 567 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 TAF2Q6P1X5 1199 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 KCTD20Q7Z5Y7 419 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 HERC6Q8IVU3 1022 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 CCDC117Q8IWD4 279 aaPredicted RBP5.85□□□□□ -1.47
SCFD1-209ENST00000553280 FTSJ3Q8IY81 847 aaKnown RBP5.85□□□□□ -1.47
SCFD1-209ENST00000553280 NME8Q8N427 588 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 TTC9BQ8N6N2 239 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 PSD4Q8NDX1 1056 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 OR1N1Q8NGS0 311 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 SLC30A5Q8TAD4 765 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 FAM227BQ96M60 508 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 TRIM5Q9C035 493 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 PABPC3Q9H361 631 aaKnown RBP5.85□□□□□ -1.47
SCFD1-209ENST00000553280 TP63Q9H3D4 680 aaPredicted RBP5.85□□□□□ -1.47
SCFD1-209ENST00000553280 MLXIPQ9HAP2 919 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 HELLSQ9NRZ9 838 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 TMOD4Q9NZQ9 345 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 CDYLQ9Y232 598 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 MYRFQ9Y2G1 1151 aa5.85□□□□□ -1.47
SCFD1-209ENST00000553280 CCDC195A0A1B0GUA6 201 aa5.84□□□□□ -1.47
SCFD1-209ENST00000553280 B9A039 149 aa5.84□□□□□ -1.47
SCFD1-209ENST00000553280 FCHO1O14526 889 aa5.84□□□□□ -1.47
SCFD1-209ENST00000553280 SOAT2O75908 522 aa5.84□□□□□ -1.47
SCFD1-209ENST00000553280 ACTL6BO94805 426 aa5.84□□□□□ -1.47
SCFD1-209ENST00000553280 MST1P26927 711 aa5.84□□□□□ -1.47
SCFD1-209ENST00000553280 ADD2P35612 726 aa5.84□□□□□ -1.47
SCFD1-209ENST00000553280 CASP2P42575 452 aa5.84□□□□□ -1.47
SCFD1-209ENST00000553280 GCLCP48506 637 aaPredicted RBP5.84□□□□□ -1.47
SCFD1-209ENST00000553280 PXNP49023 591 aaPredicted RBP5.84□□□□□ -1.47
SCFD1-209ENST00000553280 LILRA4P59901 499 aa5.84□□□□□ -1.47
SCFD1-209ENST00000553280 KRT17Q04695 432 aa5.84□□□□□ -1.47
SCFD1-209ENST00000553280 G3BP1Q13283 466 aaKnown RBP eCLIP5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms