RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 ATXN3P54252 364 aaPredicted RBP13.93□□□□□ -0.18
VPS29-211ENST00000553128 ZNF423Q2M1K9 1284 aa13.93□□□□□ -0.18
VPS29-211ENST00000553128 METTL23Q86XA0 190 aa13.93□□□□□ -0.18
VPS29-211ENST00000553128 THEM5Q8N1Q8 247 aa13.93□□□□□ -0.18
VPS29-211ENST00000553128 HMGB4Q8WW32 186 aa13.93□□□□□ -0.18
VPS29-211ENST00000553128 CRELD1Q96HD1 420 aa13.93□□□□□ -0.18
VPS29-211ENST00000553128 SPACA7Q96KW9 195 aa13.93□□□□□ -0.18
VPS29-211ENST00000553128 CCDC86Q9H6F5 360 aaKnown RBP13.93□□□□□ -0.18
VPS29-211ENST00000553128 DSEQ9UL01 958 aa13.93□□□□□ -0.18
VPS29-211ENST00000553128 SLC6A14Q9UN76 642 aa13.93□□□□□ -0.18
VPS29-211ENST00000553128 PI4KAP42356 2102 aa13.93□□□□□ -0.18
VPS29-211ENST00000553128 PLXNB3Q9ULL4 1909 aa13.92□□□□□ -0.18
VPS29-211ENST00000553128 TRAV19A0A0A6YYK7 116 aa13.92□□□□□ -0.18
VPS29-211ENST00000553128 SCAMP3O14828 347 aaKnown RBP13.92□□□□□ -0.18
VPS29-211ENST00000553128 OGTO15294 1046 aa13.92□□□□□ -0.18
VPS29-211ENST00000553128 EPB41L2O43491 1005 aaKnown RBP13.92□□□□□ -0.18
VPS29-211ENST00000553128 ALDH1A2O94788 518 aa13.92□□□□□ -0.18
VPS29-211ENST00000553128 NOL4O94818 638 aa13.92□□□□□ -0.18
VPS29-211ENST00000553128 FTH1P19P0C7X4 201 aa13.92□□□□□ -0.18
VPS29-211ENST00000553128 RDXP35241 583 aaKnown RBP13.92□□□□□ -0.18
VPS29-211ENST00000553128 GFPT1Q06210 699 aaPredicted RBP13.92□□□□□ -0.18
VPS29-211ENST00000553128 SMARCB1Q12824 385 aa13.92□□□□□ -0.18
VPS29-211ENST00000553128 NR1H3Q13133 447 aa13.92□□□□□ -0.18
VPS29-211ENST00000553128 TMEM132DQ14C87 1099 aa13.92□□□□□ -0.18
VPS29-211ENST00000553128 TRIP6Q15654 476 aaKnown RBP13.92□□□□□ -0.18
VPS29-211ENST00000553128 SCARA3Q6AZY7 606 aa13.92□□□□□ -0.18
VPS29-211ENST00000553128 SLC39A4Q6P5W5 647 aa13.92□□□□□ -0.18
VPS29-211ENST00000553128 CCNI2Q6ZMN8 369 aaPredicted RBP13.92□□□□□ -0.18
VPS29-211ENST00000553128 C12orf40Q86WS4 652 aa13.92□□□□□ -0.18
VPS29-211ENST00000553128 WHAMMQ8TF30 809 aa13.92□□□□□ -0.18
VPS29-211ENST00000553128 TMEM206Q9H813 350 aa13.92□□□□□ -0.18
VPS29-211ENST00000553128 BCCIPQ9P287 314 aaKnown RBP eCLIP13.92□□□□□ -0.18
VPS29-211ENST00000553128 CPSF3Q9UKF6 684 aaKnown RBP13.92□□□□□ -0.18
VPS29-211ENST00000553128 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.92□□□□□ -0.18
VPS29-211ENST00000553128 KALRNO60229 2985 aa13.91□□□□□ -0.18
VPS29-211ENST00000553128 NFATC1O95644 943 aa13.91□□□□□ -0.18
VPS29-211ENST00000553128 PRB1P04280 392 aa13.91□□□□□ -0.18
VPS29-211ENST00000553128 CYP17A1P05093 508 aa13.91□□□□□ -0.18
VPS29-211ENST00000553128 SERPINF2P08697 491 aa13.91□□□□□ -0.18
VPS29-211ENST00000553128 LIG4P49917 911 aa13.91□□□□□ -0.18
VPS29-211ENST00000553128 SMTNP53814 917 aa13.91□□□□□ -0.18
VPS29-211ENST00000553128 NCKAP1LP55160 1127 aa13.91□□□□□ -0.18
VPS29-211ENST00000553128 MRPS21P82921 87 aaKnown RBP13.91□□□□□ -0.18
VPS29-211ENST00000553128 ORC2Q13416 577 aaPredicted RBP13.91□□□□□ -0.18
VPS29-211ENST00000553128 PDIA5Q14554 519 aa13.91□□□□□ -0.18
VPS29-211ENST00000553128 DUOXA1Q1HG43 343 aa13.91□□□□□ -0.18
VPS29-211ENST00000553128 DCP1BQ8IZD4 617 aaKnown RBP13.91□□□□□ -0.18
VPS29-211ENST00000553128 CCDC26Q8TAB7 109 aa13.91□□□□□ -0.18
VPS29-211ENST00000553128 ADAMTS14Q8WXS8 1223 aa13.91□□□□□ -0.18
VPS29-211ENST00000553128 TRMT2BQ96GJ1 504 aaKnown RBP13.91□□□□□ -0.18
VPS29-211ENST00000553128 MYRFLQ96LU7 910 aa13.91□□□□□ -0.18
VPS29-211ENST00000553128 APC2O95996 2303 aa13.9□□□□□ -0.18
VPS29-211ENST00000553128 A0A0B4J269 797 aa13.9□□□□□ -0.18
VPS29-211ENST00000553128 TCRBV21S2A2A0A5A6 115 aa13.9□□□□□ -0.18
VPS29-211ENST00000553128 TISP43B9A030 160 aa13.9□□□□□ -0.18
VPS29-211ENST00000553128 ARHGAP33O14559 1287 aa13.9□□□□□ -0.18
VPS29-211ENST00000553128 HNRNPDLO14979 420 aaKnown RBP13.9□□□□□ -0.18
VPS29-211ENST00000553128 HCRTO43612 131 aa13.9□□□□□ -0.18
VPS29-211ENST00000553128 GJB3O75712 270 aa13.9□□□□□ -0.18
VPS29-211ENST00000553128 ACAT1P24752 427 aaKnown RBP13.9□□□□□ -0.18
VPS29-211ENST00000553128 KIR2DL1P43626 348 aaPredicted RBP13.9□□□□□ -0.18
VPS29-211ENST00000553128 ACOT2P49753 483 aa13.9□□□□□ -0.18
VPS29-211ENST00000553128 TAF6P49848 677 aa13.9□□□□□ -0.18
VPS29-211ENST00000553128 RPL6Q02878 288 aaKnown RBP13.9□□□□□ -0.18
VPS29-211ENST00000553128 ZRSR1Q15695 479 aaKnown RBP13.9□□□□□ -0.18
VPS29-211ENST00000553128 SPDYCQ5MJ68 293 aa13.9□□□□□ -0.18
VPS29-211ENST00000553128 KRT79Q5XKE5 535 aa13.9□□□□□ -0.18
VPS29-211ENST00000553128 SLCO6A1Q86UG4 719 aa13.9□□□□□ -0.18
VPS29-211ENST00000553128 MARCH9Q86YJ5 346 aa13.9□□□□□ -0.18
VPS29-211ENST00000553128 PGBD3Q8N328 593 aa13.9□□□□□ -0.18
VPS29-211ENST00000553128 PNMA5Q96PV4 448 aa13.9□□□□□ -0.18
VPS29-211ENST00000553128 PLIN2Q99541 437 aa13.9□□□□□ -0.18
VPS29-211ENST00000553128 PKMYT1Q99640 499 aa13.9□□□□□ -0.18
VPS29-211ENST00000553128 MSTO1Q9BUK6 570 aa13.9□□□□□ -0.18
VPS29-211ENST00000553128 TIPINQ9BVW5 301 aa13.9□□□□□ -0.18
VPS29-211ENST00000553128 CCSER1Q9C0I3 900 aa13.9□□□□□ -0.18
VPS29-211ENST00000553128 POLMQ9NP87 494 aaPredicted RBP13.9□□□□□ -0.18
VPS29-211ENST00000553128 DNAAF2Q9NVR5 837 aaKnown RBP13.9□□□□□ -0.18
VPS29-211ENST00000553128 ARHGAP26Q9UNA1 814 aa13.9□□□□□ -0.18
VPS29-211ENST00000553128 CYSRT1A8MQ03 144 aa13.89□□□□□ -0.19
VPS29-211ENST00000553128 KPNA7A9QM74 516 aa13.89□□□□□ -0.19
VPS29-211ENST00000553128 LEFTY2O00292 366 aa13.89□□□□□ -0.19
VPS29-211ENST00000553128 KAT7O95251 611 aa13.89□□□□□ -0.19
VPS29-211ENST00000553128 TCF3P15923 654 aa13.89□□□□□ -0.19
VPS29-211ENST00000553128 HDCP19113 662 aa13.89□□□□□ -0.19
VPS29-211ENST00000553128 PAX3P23760 479 aa13.89□□□□□ -0.19
VPS29-211ENST00000553128 HOXD12P35452 270 aa13.89□□□□□ -0.19
VPS29-211ENST00000553128 TOB1P50616 345 aaPredicted RBP13.89□□□□□ -0.19
VPS29-211ENST00000553128 SLC12A3P55017 1021 aa13.89□□□□□ -0.19
VPS29-211ENST00000553128 KDSRQ06136 332 aa13.89□□□□□ -0.19
VPS29-211ENST00000553128 ARSHQ5FYA8 562 aa13.89□□□□□ -0.19
VPS29-211ENST00000553128 LMBRD2Q68DH5 695 aaPredicted RBP13.89□□□□□ -0.19
VPS29-211ENST00000553128 FILIP1Q7Z7B0 1213 aa13.89□□□□□ -0.19
VPS29-211ENST00000553128 SLC41A1Q8IVJ1 513 aa13.89□□□□□ -0.19
VPS29-211ENST00000553128 ADGRG2Q8IZP9 1017 aa13.89□□□□□ -0.19
VPS29-211ENST00000553128 CEP76Q8TAP6 659 aa13.89□□□□□ -0.19
VPS29-211ENST00000553128 TSPAN18Q96SJ8 248 aa13.89□□□□□ -0.19
VPS29-211ENST00000553128 DPP3Q9NY33 737 aa13.89□□□□□ -0.19
VPS29-211ENST00000553128 CACNA2D2Q9NY47 1150 aa13.89□□□□□ -0.19
VPS29-211ENST00000553128 UXTQ9UBK9 157 aaPredicted RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms