RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 C6orf118Q5T5N4 469 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 GKAP1Q5VSY0 366 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-215ENST00000552823 PLEKHA7Q6IQ23 1121 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 PMF1Q6P1K2 205 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 CES3Q6UWW8 571 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 ILDR2Q71H61 639 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 HACE1Q8IYU2 909 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 PYROXD2Q8N2H3 581 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 NME8Q8N427 588 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 MREGQ8N565 214 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 CCNYQ8ND76 341 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 CCDC110Q8TBZ0 833 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 ATXN7L3BQ96GX2 97 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 AGAP3Q96P47 875 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 C2orf40Q9H1Z8 148 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 SLCO1B3Q9NPD5 702 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 HAUS2Q9NVX0 235 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 HESX1Q9UBX0 185 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 PCYOX1Q9UHG3 505 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 DCTN4Q9UJW0 460 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 CES2O00748 559 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 FAM155BO75949 473 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 RECQL4O94761 1208 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 ABCG1P45844 678 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 ZNF157P51786 506 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-215ENST00000552823 RTP1P59025 263 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 YWHAEP62258 255 aaKnown RBP5.87□□□□□ -1.47
LIMA1-215ENST00000552823 PITX1P78337 314 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-215ENST00000552823 SKOR1P84550 965 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 GHRHRQ02643 423 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 MCL1Q07820 350 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 MYO1EQ12965 1108 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 LAMC2Q13753 1193 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 PPP2R5EQ16537 467 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 TAPT1Q6NXT6 567 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 MTHFD1LQ6UB35 978 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 CXCL17Q6UXB2 119 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 LRIG3Q6UXM1 1119 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 FAM183BPQ6ZVS7 135 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 SPNS2Q8IVW8 549 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 ARFGAP1Q8N6T3 406 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 GRK7Q8WTQ7 553 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 PYROXD1Q8WU10 500 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 DEPDC1BQ8WUY9 529 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 ART4Q93070 314 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 FAF2Q96CS3 445 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 TBC1D31Q96DN5 1066 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 TRIM11Q96F44 468 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 JPH2Q9BR39 696 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-215ENST00000552823 CCDC77Q9BR77 488 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 FZD8Q9H461 694 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 RAB6BQ9NRW1 208 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 PRMT7Q9NVM4 692 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-215ENST00000552823 NKIRAS1Q9NYS0 192 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 SAMD15Q9P1V8 674 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 TRIM33Q9UPN9 1127 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 ADGRA2Q96PE1 1338 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 IGKV6D-21A0A0A0MT36 114 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 CCDC195A0A1B0GUA6 201 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 MEFVO15553 781 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-215ENST00000552823 ZC3H11AO75152 810 aaKnown RBP eCLIP5.86□□□□□ -1.47
LIMA1-215ENST00000552823 TTC4O95801 387 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 HMGCRP04035 888 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 APRTP07741 180 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 ITIH2P19823 946 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 CYP3A5P20815 502 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 SAT1P21673 171 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 EDNRBP24530 442 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 GMPRP36959 345 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 SLC1A1P43005 524 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 NDUFV1P49821 464 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 PTP4A2Q12974 167 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 OLIG2Q13516 323 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 SPARCL1Q14515 664 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 MSS51Q4VC12 460 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 C3orf62Q6ZUJ4 267 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 TADA2BQ86TJ2 420 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 RCOR2Q8IZ40 523 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 PPM1NQ8N819 430 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 FAM172AQ8WUF8 416 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 TMEM40Q8WWA1 233 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 CHMP6Q96FZ7 201 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 RBM41Q96IZ5 413 aaKnown RBP5.86□□□□□ -1.47
LIMA1-215ENST00000552823 PTPN18Q99952 460 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 APOL2Q9BQE5 337 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 TINF2Q9BSI4 451 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 TRAIPQ9BWF2 469 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 NT5C1AQ9BXI3 368 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 MROH8Q9H579 483 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 LRRC19Q9H756 370 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 GBA2Q9HCG7 927 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-215ENST00000552823 NMRK2Q9NPI5 230 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 BAIAP2L1Q9UHR4 511 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 KCNG1Q9UIX4 513 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 USP18Q9UMW8 372 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 KIAA0100Q14667 2235 aaKnown RBP5.86□□□□□ -1.47
LIMA1-215ENST00000552823 COL11A1P12107 1806 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-215ENST00000552823 CASTOR2A6NHX0 329 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 MCF2LO15068 1137 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 LIASO43766 372 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms