RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 GMPRP36959 345 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 PRELPP51888 382 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 ALDH18A1P54886 795 aaKnown RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 MFAP3P55082 362 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 ACTR3P61158 418 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 PSMC5P62195 406 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 OASLQ15646 514 aaKnown RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 SMTNL2Q2TAL5 461 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 CEP55Q53EZ4 464 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 KCNT1Q5JUK3 1230 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 PLA2G4FQ68DD2 849 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 ZNF772Q68DY9 489 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 ADGRD1Q6QNK2 874 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 HAUS6Q7Z4H7 955 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 SCUBE1Q8IWY4 988 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 SLITRK1Q96PX8 696 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 DHRS4Q9BTZ2 278 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 RAVER2Q9HCJ3 691 aaKnown RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 DDX18Q9NVP1 670 aaKnown RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 RAB20Q9NX57 234 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 CNTN3Q9P232 1028 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 PDP2Q9P2J9 529 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 RPL26L1Q9UNX3 145 aaKnown RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 MRPL11Q9Y3B7 192 aaKnown RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 TELO2Q9Y4R8 837 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 GJA3Q9Y6H8 435 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 FOCADQ5VW36 1801 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 DNAH12Q6ZR08 3092 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 COL5A3P25940 1745 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 SGK1O00141 431 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 VILLO15195 856 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 ZSCAN9O15535 394 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 LPXNO60711 386 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 C6orf222P0C671 652 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 ITGB5P18084 799 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 PCSK6P29122 969 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 CPOXP36551 454 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 SLC1A1P43005 524 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 RAP1GDS1P52306 607 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 PTP4A2Q12974 167 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 KBTBD12Q3ZCT8 623 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 SPDYAQ5MJ70 313 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 C1orf146Q5VVC0 180 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 DUS1LQ6P1R4 473 aaKnown RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 HHIPL2Q6UWX4 724 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 MARK2Q7KZI7 788 aaKnown RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 SPATA24Q86W54 205 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 LDHDQ86WU2 507 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 ARID3BQ8IVW6 561 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 METTL25Q8N6Q8 603 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 PPFIBP2Q8ND30 876 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 IL31RAQ8NI17 732 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 NAT14Q8WUY8 206 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 CCDC124Q96CT7 223 aaKnown RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 WDR11Q9BZH6 1224 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 SMYD3Q9H7B4 428 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 GINM1Q9NU53 330 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 NYAP2Q9P242 653 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 PPARGC1AQ9UBK2 798 aaKnown RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 FAM198AQ9UFP1 575 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 CHMP2BQ9UQN3 213 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 FARP1Q9Y4F1 1045 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 GREB1LQ9C091 1923 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 CXorf49A8MYA2 514 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 TLR3O15455 904 aaKnown RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 SLC26A4O43511 780 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 OPHN1O60890 802 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 ZMPSTE24O75844 475 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 CD48P09326 243 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 GPC3P51654 580 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 MRPS5P82675 430 aaKnown RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 BST1Q10588 318 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 HIF1AQ16665 826 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 BBS9Q3SYG4 887 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 OLFML2BQ68BL8 750 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 POTEAQ6S8J7 498 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 B3GNT9Q6UX72 402 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 RHOT1Q8IXI2 618 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 KATNAL2Q8IYT4 538 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 PYROXD1Q8WU10 500 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 BSNDQ8WZ55 320 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 AKT1S1Q96B36 256 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 MPP4Q96JB8 637 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 NR1H4Q96RI1 486 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 PLVAPQ9BX97 442 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 GLIS2Q9BZE0 524 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-214ENST00000552783 FAM192AQ9GZU8 254 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 VPS11Q9H270 941 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 PLAC1Q9HBJ0 212 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 SEL1LQ9UBV2 794 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 ZHX2Q9Y6X8 837 aa5.08□□□□□ -1.6
LIMA1-214ENST00000552783 NRAPQ86VF7 1730 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 CREB3O43889 395 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 TM7SF2O76062 418 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 ASLP04424 464 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 SMIM18P0DKX4 95 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 VAV1P15498 845 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 MAN1A1P33908 653 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 RARRES1P49788 294 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms