RNA–Protein interactions for RNA: ENST00000550857.5

PTPRB-209, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRB, Length 5,839 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-209ENST00000550857 SPAG6O75602 509 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 MT-ND3P03897 115 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 BLKP51451 505 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 UBE3AQ05086 875 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 TROAPQ12815 778 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 PDK2Q15119 407 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 LY6KQ17RY6 165 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 GPR158Q5T848 1215 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 BEND7Q8N7W2 519 aaPredicted RBP8.41□□□□□ -1.06
PTPRB-209ENST00000550857 CLMNQ96JQ2 1002 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 DDIT4Q9NX09 232 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 APEX2Q9UBZ4 518 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 SRGAP2O75044 1071 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 PAEPP09466 180 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 SNRPD1P62314 119 aaKnown RBP8.41□□□□□ -1.06
PTPRB-209ENST00000550857 WDR45BQ5MNZ6 344 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 ATG16L1Q676U5 607 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 RILPQ96NA2 401 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 TBCBQ99426 244 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 VCX3BQ9H321 246 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 C2CD2Q9Y426 696 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 ASLP04424 464 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 KRT16P08779 473 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 CNPP09543 421 aaKnown RBP8.41□□□□□ -1.06
PTPRB-209ENST00000550857 ICAM3P32942 547 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 DRAP1Q14919 205 aaPredicted RBP8.41□□□□□ -1.06
PTPRB-209ENST00000550857 PLCL1Q15111 1095 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 MRNIPQ6NTE8 343 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 SERPINA13PQ6UXR4 307 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 LRRC52Q8N7C0 313 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 ZNF564Q8TBZ8 553 aaPredicted RBP8.41□□□□□ -1.06
PTPRB-209ENST00000550857 TUBB6Q9BUF5 446 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 EFHD1Q9BUP0 239 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 PLEKHA4Q9H4M7 779 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 ABCC13Q9NSE7 274 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 KLK14Q9P0G3 267 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 STOML1Q9UBI4 398 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 ORC6Q9Y5N6 252 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 RGPD8O14715 1765 aaPredicted RBP8.41□□□□□ -1.06
PTPRB-209ENST00000550857 TREHO43280 583 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 FOXD2O60548 495 aaPredicted RBP8.41□□□□□ -1.06
PTPRB-209ENST00000550857 ERN1O75460 977 aaKnown RBP8.41□□□□□ -1.06
PTPRB-209ENST00000550857 MMP3P08254 477 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 HDCP19113 662 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 KLRK1P26718 216 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 SERPINA4P29622 427 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 TCP11X2Q5H9J9 407 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 NXNQ6DKJ4 435 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 DENND5BQ6ZUT9 1274 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 BRSK2Q8IWQ3 736 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 FAM76AQ8TAV0 307 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 LRRC46Q96FV0 321 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 CORO1BQ9BR76 489 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 TRIM9Q9C026 710 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 COMMD8Q9NX08 183 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 DRG1Q9Y295 367 aaKnown RBP8.41□□□□□ -1.06
PTPRB-209ENST00000550857 SMIM23A6NLE4 172 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 U2AF2P26368 475 aaKnown RBP eCLIP8.4□□□□□ -1.06
PTPRB-209ENST00000550857 CCT5P48643 541 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 CAMK2GQ13555 558 aaPredicted RBP8.4□□□□□ -1.06
PTPRB-209ENST00000550857 PLPP4Q5VZY2 271 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 FAM173BQ6P4H8 233 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 FBXL19Q6PCT2 694 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 CCDC121Q6ZUS5 278 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 PYROXD1Q8WU10 500 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 RAD9AQ99638 391 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 TRIM31Q9BZY9 425 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 UBIAD1Q9Y5Z9 338 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 FRMPD4Q14CM0 1322 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.4□□□□□ -1.06
PTPRB-209ENST00000550857 PRPF4O43172 522 aaKnown RBP eCLIP8.4□□□□□ -1.06
PTPRB-209ENST00000550857 MAFO75444 373 aaPredicted RBP8.4□□□□□ -1.06
PTPRB-209ENST00000550857 FDFT1P37268 417 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 MAPK9P45984 424 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 VEGFBP49765 207 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 FXR1P51114 621 aaKnown RBP eCLIP8.4□□□□□ -1.06
PTPRB-209ENST00000550857 EFEMP1Q12805 493 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 KRT71Q3SY84 523 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 MMEL1Q495T6 779 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 FASTKD1Q53R41 847 aaKnown RBP8.4□□□□□ -1.06
PTPRB-209ENST00000550857 PPP1R15BQ5SWA1 713 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 TTC39BQ5VTQ0 682 aaPredicted RBP8.4□□□□□ -1.06
PTPRB-209ENST00000550857 NAA35Q5VZE5 725 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 SLC30A10Q6XR72 485 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 SLC22A17Q8WUG5 538 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 BRI3BPQ8WY22 251 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 HAPLN3Q96S86 360 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 TRIM15Q9C019 465 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 SLC32A1Q9H598 525 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 KRT82Q9NSB4 513 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 ST3GAL5Q9UNP4 418 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 DUOX1Q9NRD9 1551 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 KLRG2A4D1S0 409 aaPredicted RBP8.4□□□□□ -1.06
PTPRB-209ENST00000550857 CACNB4O00305 520 aaPredicted RBP8.4□□□□□ -1.06
PTPRB-209ENST00000550857 SGPL1O95470 568 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 NMT1P30419 496 aaKnown RBP8.4□□□□□ -1.06
PTPRB-209ENST00000550857 FMO5P49326 533 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 DYNLT1P63172 113 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 PDGFRLQ15198 375 aa8.4□□□□□ -1.06
PTPRB-209ENST00000550857 DBN1Q16643 649 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms