RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 BOLA3Q53S33 107 aa15.66■□□□□ 0.1
CUX1-214ENST00000550008 EPAS1Q99814 870 aa15.66■□□□□ 0.1
CUX1-214ENST00000550008 KIF9Q9HAQ2 790 aa15.66■□□□□ 0.1
CUX1-214ENST00000550008 ABCF3Q9NUQ8 709 aa15.66■□□□□ 0.1
CUX1-214ENST00000550008 PPP2R3BQ9Y5P8 575 aa15.66■□□□□ 0.1
CUX1-214ENST00000550008 TCRBV7S2A1N4TA0A589 114 aa15.66■□□□□ 0.1
CUX1-214ENST00000550008 RASSF10A6NK89 507 aa15.66■□□□□ 0.1
CUX1-214ENST00000550008 TRIM49D1C9J1S8 452 aa15.66■□□□□ 0.1
CUX1-214ENST00000550008 CCNG2Q16589 344 aa15.66■□□□□ 0.1
CUX1-214ENST00000550008 C15orf59Q2T9L4 293 aaPredicted RBP15.66■□□□□ 0.1
CUX1-214ENST00000550008 SH2D4BQ5SQS7 431 aa15.66■□□□□ 0.1
CUX1-214ENST00000550008 CPNE8Q86YQ8 564 aa15.66■□□□□ 0.1
CUX1-214ENST00000550008 ATP6V1E2Q96A05 226 aa15.66■□□□□ 0.1
CUX1-214ENST00000550008 ARL2BPQ9Y2Y0 163 aa15.66■□□□□ 0.1
CUX1-214ENST00000550008 GOLGA4Q13439 2230 aaKnown RBP15.66■□□□□ 0.1
CUX1-214ENST00000550008 ARHGEF37A1IGU5 675 aa15.66■□□□□ 0.1
CUX1-214ENST00000550008 AP1G2O75843 785 aa15.66■□□□□ 0.1
CUX1-214ENST00000550008 TTC4O95801 387 aa15.66■□□□□ 0.1
CUX1-214ENST00000550008 PECAM1P16284 738 aaPredicted RBP15.66■□□□□ 0.1
CUX1-214ENST00000550008 HIRAP54198 1017 aaPredicted RBP15.66■□□□□ 0.1
CUX1-214ENST00000550008 KDSRQ06136 332 aa15.66■□□□□ 0.1
CUX1-214ENST00000550008 TAF1BQ53T94 588 aaPredicted RBP15.66■□□□□ 0.1
CUX1-214ENST00000550008 PAK5Q9P286 719 aa15.66■□□□□ 0.1
CUX1-214ENST00000550008 PPP1R12AO14974 1030 aaPredicted RBP15.65■□□□□ 0.1
CUX1-214ENST00000550008 PPFIA2O75334 1257 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 FAM200BP0CF97 657 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 ZFXP17010 805 aaPredicted RBP15.65■□□□□ 0.1
CUX1-214ENST00000550008 ELF1P32519 619 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 OR1G1P47890 313 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 DENND5BQ6ZUT9 1274 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 SPATA2LQ8IUW3 424 aaPredicted RBP15.65■□□□□ 0.1
CUX1-214ENST00000550008 NDUFAF2Q8N183 169 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 E5RJQ4 531 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 NFKBIEO00221 500 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 CYB561D2O14569 222 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 FANCGO15287 622 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 RIPK2O43353 540 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 PEX19P40855 299 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 SLC26A2P50443 739 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 CELF3Q5SZQ8 465 aaKnown RBP15.65■□□□□ 0.1
CUX1-214ENST00000550008 TRPM8Q7Z2W7 1104 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 RPAINQ86UA6 219 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 FAM111AQ96PZ2 611 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 ROPN1BQ9BZX4 212 aaPredicted RBP15.65■□□□□ 0.1
CUX1-214ENST00000550008 ROPN1Q9HAT0 212 aaPredicted RBP15.65■□□□□ 0.1
CUX1-214ENST00000550008 ABI2Q9NYB9 513 aaPredicted RBP15.65■□□□□ 0.1
CUX1-214ENST00000550008 KLRG2A4D1S0 409 aaPredicted RBP15.65■□□□□ 0.1
CUX1-214ENST00000550008 NCKAP1LP55160 1127 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 COPS2P61201 443 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 SV2CQ496J9 727 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 ABHD15Q6UXT9 468 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 NETO2Q8NC67 525 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 CNPY3Q9BT09 278 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 CDT1Q9H211 546 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 GTSE1Q9NYZ3 720 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 COG5Q9UP83 839 aa15.65■□□□□ 0.1
CUX1-214ENST00000550008 MICAL2O94851 1124 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 CST3P01034 146 aaPredicted RBP15.64■□□□□ 0.09
CUX1-214ENST00000550008 MIPP30301 263 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 TAF11Q15544 211 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 ICE2Q659A1 982 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 SARS2Q9NP81 518 aaKnown RBP15.64■□□□□ 0.09
CUX1-214ENST00000550008 KLC4Q9NSK0 619 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 KCNA2P16389 499 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 CPA2P48052 419 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 MAP3K7CLP57077 242 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 MAMLD1Q13495 774 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 HABP4Q5JVS0 413 aaKnown RBP15.64■□□□□ 0.09
CUX1-214ENST00000550008 RAET1EQ8TD07 263 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 HES6Q96HZ4 224 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 BTBD7Q9P203 1132 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 NAALADL1Q9UQQ1 740 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 APOBEC2Q9Y235 224 aaKnown RBP15.64■□□□□ 0.09
CUX1-214ENST00000550008 C17orf102A2RUQ5 167 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 SH3BP5O60239 455 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 TAS2R40P59535 323 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 FBXO47Q5MNV8 452 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 IL31Q6EBC2 164 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 ARMC2Q8NEN0 867 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 EDEM1Q92611 657 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 ZNF669Q96BR6 464 aaPredicted RBP15.64■□□□□ 0.09
CUX1-214ENST00000550008 VPS39Q96JC1 886 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 TSSK1BQ9BXA7 367 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 VCX3BQ9H321 246 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.64■□□□□ 0.093e-6■■■■□ 19.4
CUX1-214ENST00000550008 UBP1Q9NZI7 540 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 WHRNQ9P202 907 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 BMPR2Q13873 1038 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 FASTKD1Q53R41 847 aaKnown RBP15.64■□□□□ 0.09
CUX1-214ENST00000550008 C12orf29Q8N999 325 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 IPMKQ8NFU5 416 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 BHMTQ93088 406 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 CAMKK2Q96RR4 588 aa15.64■□□□□ 0.09
CUX1-214ENST00000550008 TADA2AO75478 443 aa15.63■□□□□ 0.09
CUX1-214ENST00000550008 POMCP01189 267 aa15.63■□□□□ 0.09
CUX1-214ENST00000550008 ALDH18A1P54886 795 aaKnown RBP15.63■□□□□ 0.09
CUX1-214ENST00000550008 FAM182AQ5T1J6 154 aa15.63■□□□□ 0.09
CUX1-214ENST00000550008 ZNF662Q6ZS27 426 aa15.63■□□□□ 0.09
CUX1-214ENST00000550008 ADGRF2Q8IZF7 708 aa15.63■□□□□ 0.09
CUX1-214ENST00000550008 FAM161BQ96MY7 647 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms