RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 PDE11AQ9HCR9 933 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 PANK4Q9NVE7 773 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 DUS2Q9NX74 493 aaKnown RBP13.78□□□□□ -0.2
PTCH1-218ENST00000548945 R3HCC1Q9Y3T6 440 aaKnown RBP13.78□□□□□ -0.2
PTCH1-218ENST00000548945 CFAP47Q6ZTR5 3102 aa13.77□□□□□ -0.2
PTCH1-218ENST00000548945 AXIN1O15169 862 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 KRT19P08727 400 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 ACAT1P24752 427 aaKnown RBP13.77□□□□□ -0.21
PTCH1-218ENST00000548945 HOXC13P31276 330 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 IFNAR2P48551 515 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 PXNP49023 591 aaPredicted RBP13.77□□□□□ -0.21
PTCH1-218ENST00000548945 RESTQ13127 1097 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 NR1H3Q13133 447 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 SLC39A14Q15043 492 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 EML3Q32P44 896 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 AASDHQ4L235 1098 aaPredicted RBP13.77□□□□□ -0.21
PTCH1-218ENST00000548945 IL31Q6EBC2 164 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 VSTM1Q6UX27 236 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 KBTBD6Q86V97 674 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 OSTM1Q86WC4 334 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 CCDC65Q8IXS2 484 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 C12orf50Q8NA57 414 aaPredicted RBP13.77□□□□□ -0.21
PTCH1-218ENST00000548945 STKLD1Q8NE28 680 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 CD101Q93033 1021 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 MTMR12Q9C0I1 747 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 ARRDC1-AS1Q9H2J1 176 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 FBRSL1Q9HCM7 1045 aaKnown RBP13.77□□□□□ -0.21
PTCH1-218ENST00000548945 TRPC7Q9HCX4 862 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 INTS13Q9NVM9 706 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 GCNT4Q9P109 453 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 EBF1Q9UH73 591 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 CDH9Q9ULB4 789 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 FRYQ5TBA9 3013 aa13.77□□□□□ -0.21
PTCH1-218ENST00000548945 MYO18AQ92614 2054 aaKnown RBP13.76□□□□□ -0.21
PTCH1-218ENST00000548945 THADAQ6YHU6 1953 aa13.76□□□□□ -0.21
PTCH1-218ENST00000548945 GOLGA8IPA6NC78 632 aa13.76□□□□□ -0.21
PTCH1-218ENST00000548945 ZNF233A6NK53 670 aa13.76□□□□□ -0.21
PTCH1-218ENST00000548945 GOLGA8JA6NMD2 632 aa13.76□□□□□ -0.21
PTCH1-218ENST00000548945 TM4SF5O14894 197 aa13.76□□□□□ -0.21
PTCH1-218ENST00000548945 TNNC2P02585 160 aa13.76□□□□□ -0.21
PTCH1-218ENST00000548945 SYT1P21579 422 aa13.76□□□□□ -0.21
PTCH1-218ENST00000548945 KCNB1Q14721 858 aa13.76□□□□□ -0.21
PTCH1-218ENST00000548945 DUOXA2Q1HG44 320 aa13.76□□□□□ -0.21
PTCH1-218ENST00000548945 KBTBD7Q8WVZ9 684 aa13.76□□□□□ -0.21
PTCH1-218ENST00000548945 HPDLQ96IR7 371 aa13.76□□□□□ -0.21
PTCH1-218ENST00000548945 SLC22A12Q96S37 553 aa13.76□□□□□ -0.21
PTCH1-218ENST00000548945 CYP2S1Q96SQ9 504 aa13.76□□□□□ -0.21
PTCH1-218ENST00000548945 SYT15Q9BQS2 421 aa13.76□□□□□ -0.21
PTCH1-218ENST00000548945 FGFBP2Q9BYJ0 223 aa13.76□□□□□ -0.21
PTCH1-218ENST00000548945 LRRC27Q9C0I9 530 aa13.76□□□□□ -0.21
PTCH1-218ENST00000548945 KIAA1586Q9HCI6 787 aa13.76□□□□□ -0.21
PTCH1-218ENST00000548945 EHD2Q9NZN4 543 aa13.76□□□□□ -0.21
PTCH1-218ENST00000548945 MAGEC2Q9UBF1 373 aaPredicted RBP13.76□□□□□ -0.21
PTCH1-218ENST00000548945 ARHGAP26Q9UNA1 814 aa13.76□□□□□ -0.21
PTCH1-218ENST00000548945 MYOFQ9NZM1 2061 aa13.76□□□□□ -0.21
PTCH1-218ENST00000548945 GON4LQ3T8J9 2241 aa13.75□□□□□ -0.21
PTCH1-218ENST00000548945 A0A087X0B3 334 aa13.75□□□□□ -0.21
PTCH1-218ENST00000548945 PRPF6O94906 941 aaKnown RBP13.75□□□□□ -0.21
PTCH1-218ENST00000548945 NFATC1O95644 943 aa13.75□□□□□ -0.21
PTCH1-218ENST00000548945 APBB3O95704 486 aa13.75□□□□□ -0.21
PTCH1-218ENST00000548945 FAM163BP0C2L3 166 aa13.75□□□□□ -0.21
PTCH1-218ENST00000548945 HDCP19113 662 aa13.75□□□□□ -0.21
PTCH1-218ENST00000548945 WARSP23381 471 aaKnown RBP13.75□□□□□ -0.21
PTCH1-218ENST00000548945 PPP3CCP48454 512 aa13.75□□□□□ -0.21
PTCH1-218ENST00000548945 SF3A2Q15428 464 aaKnown RBP13.75□□□□□ -0.21
PTCH1-218ENST00000548945 PLK5Q496M5 336 aa13.75□□□□□ -0.21
PTCH1-218ENST00000548945 SCARA3Q6AZY7 606 aa13.75□□□□□ -0.21
PTCH1-218ENST00000548945 SCN4BQ8IWT1 228 aa13.75□□□□□ -0.21
PTCH1-218ENST00000548945 ARL14EPQ8N8R7 260 aaPredicted RBP13.75□□□□□ -0.21
PTCH1-218ENST00000548945 RPLP0P6Q8NHW5 317 aa13.75□□□□□ -0.21
PTCH1-218ENST00000548945 SH3RF2Q8TEC5 729 aa13.75□□□□□ -0.21
PTCH1-218ENST00000548945 TNMDQ9H2S6 317 aa13.75□□□□□ -0.21
PTCH1-218ENST00000548945 CUEDC2Q9H467 287 aa13.75□□□□□ -0.21
PTCH1-218ENST00000548945 ZSCAN16Q9H4T2 348 aaPredicted RBP13.75□□□□□ -0.21
PTCH1-218ENST00000548945 PCIF1Q9H4Z3 704 aa13.75□□□□□ -0.21
PTCH1-218ENST00000548945 VPS45Q9NRW7 570 aa13.75□□□□□ -0.21
PTCH1-218ENST00000548945 WNT6Q9Y6F9 365 aa13.75□□□□□ -0.21
PTCH1-218ENST00000548945 PI4KAP42356 2102 aa13.75□□□□□ -0.21
PTCH1-218ENST00000548945 PTPRJQ12913 1337 aa13.74□□□□□ -0.21
PTCH1-218ENST00000548945 C2orf78A6NCI8 922 aa13.74□□□□□ -0.21
PTCH1-218ENST00000548945 TULP1O00294 542 aaPredicted RBP13.74□□□□□ -0.21
PTCH1-218ENST00000548945 TRIM66O15016 1216 aa13.74□□□□□ -0.21
PTCH1-218ENST00000548945 EIF3DO15371 548 aaKnown RBP eCLIP13.74□□□□□ -0.21
PTCH1-218ENST00000548945 RHOBTB1O94844 696 aa13.74□□□□□ -0.21
PTCH1-218ENST00000548945 MPLP40238 635 aa13.74□□□□□ -0.21
PTCH1-218ENST00000548945 NOP14P78316 857 aaKnown RBP13.74□□□□□ -0.21
PTCH1-218ENST00000548945 CEBPZQ03701 1054 aaKnown RBP13.74□□□□□ -0.21
PTCH1-218ENST00000548945 DMC1Q14565 340 aa13.74□□□□□ -0.21
PTCH1-218ENST00000548945 ELF2Q15723 593 aa13.74□□□□□ -0.21
PTCH1-218ENST00000548945 CCDC142Q17RM4 750 aa13.74□□□□□ -0.21
PTCH1-218ENST00000548945 STPG1Q5TH74 334 aa13.74□□□□□ -0.21
PTCH1-218ENST00000548945 DENND5BQ6ZUT9 1274 aa13.74□□□□□ -0.21
PTCH1-218ENST00000548945 C11orf74Q86VG3 221 aa13.74□□□□□ -0.21
PTCH1-218ENST00000548945 WDR49Q8IV35 697 aa13.74□□□□□ -0.21
PTCH1-218ENST00000548945 OR5B17Q8NGF7 314 aa13.74□□□□□ -0.21
PTCH1-218ENST00000548945 NOC3LQ8WTT2 800 aaKnown RBP13.74□□□□□ -0.21
PTCH1-218ENST00000548945 EZH1Q92800 747 aaPredicted RBP13.74□□□□□ -0.21
PTCH1-218ENST00000548945 INTS4Q96HW7 963 aaKnown RBP13.74□□□□□ -0.21
PTCH1-218ENST00000548945 FAM84AQ96KN4 292 aa13.74□□□□□ -0.21
PTCH1-218ENST00000548945 HHIPQ96QV1 700 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms