RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 NUB1Q9Y5A7 615 aa6.05□□□□□ -1.44
VPS50-220ENST00000544910 HSPA4LO95757 839 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 STAG3L1P0CL83 205 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 PTPRAP18433 802 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 NME3Q13232 169 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 LY6KQ17RY6 165 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 NBPF20Q3BBV1 942 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 Q3C1V9 767 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 PHF13Q86YI8 300 aaPredicted RBP6.04□□□□□ -1.44
VPS50-220ENST00000544910 WDR75Q8IWA0 830 aaKnown RBP6.04□□□□□ -1.44
VPS50-220ENST00000544910 ZNF606Q8WXB4 792 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 USP6NLQ92738 828 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 SEMA4DQ92854 862 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 SDCCAG3Q96C92 435 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 ERP27Q96DN0 273 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 CPB2Q96IY4 423 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 TMEM121Q9BTD3 319 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 SLC13A1Q9BZW2 595 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 NOD2Q9HC29 1040 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 RAB6BQ9NRW1 208 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 DONSONQ9NYP3 566 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 RNF181Q9P0P0 153 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 WRAP73Q9P2S5 460 aaPredicted RBP6.04□□□□□ -1.44
VPS50-220ENST00000544910 SNX9Q9Y5X1 595 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 COL2A1P02458 1487 aaPredicted RBP6.04□□□□□ -1.44
VPS50-220ENST00000544910 SPATA31C2B4DYI2 1134 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 ATP9AO75110 1047 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 NPTXRO95502 500 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 NCF2P19878 526 aaPredicted RBP6.04□□□□□ -1.44
VPS50-220ENST00000544910 SNAPC2Q13487 334 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 PDK2Q15119 407 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 MTMR14Q8NCE2 650 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 KCNV2Q8TDN2 545 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 TMEM176AQ96HP8 235 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 ZBTB45Q96K62 511 aaPredicted RBP6.04□□□□□ -1.44
VPS50-220ENST00000544910 SERPINI1Q99574 410 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 FRMD8Q9BZ67 464 aaPredicted RBP6.04□□□□□ -1.44
VPS50-220ENST00000544910 SMYD2Q9NRG4 433 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 COL20A1Q9P218 1284 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 APOBEC2Q9Y235 224 aaKnown RBP6.04□□□□□ -1.44
VPS50-220ENST00000544910 MTO1Q9Y2Z2 717 aaKnown RBP6.04□□□□□ -1.44
VPS50-220ENST00000544910 COL5A3P25940 1745 aaPredicted RBP6.04□□□□□ -1.44
VPS50-220ENST00000544910 TULP2O00295 520 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 ADCY3O60266 1144 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 CCDC22O60826 627 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 GRAP2O75791 330 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 MTA2O94776 668 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 APOEP02649 317 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 KRT4P19013 534 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 ACADSBP45954 432 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 RRP1BQ14684 758 aaKnown RBP6.04□□□□□ -1.44
VPS50-220ENST00000544910 ERMARDQ5T6L9 678 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 FBXO16Q8IX29 292 aaPredicted RBP6.04□□□□□ -1.44
VPS50-220ENST00000544910 KIF2BQ8N4N8 673 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 CLMNQ96JQ2 1002 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 LRGUKQ96M69 825 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 A1CFQ9NQ94 594 aaKnown RBP6.04□□□□□ -1.44
VPS50-220ENST00000544910 ZC4H2Q9NQZ6 224 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 USP18Q9UMW8 372 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 TAF1P21675 1872 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 KPNA7A9QM74 516 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 MICAL2O94851 1124 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 CHKAP35790 457 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 SLC26A2P50443 739 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 MRPS9P82933 396 aaKnown RBP6.04□□□□□ -1.44
VPS50-220ENST00000544910 ENPEPQ07075 957 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 KCNT1Q5JUK3 1230 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 ITPRIPL1Q6GPH6 555 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.04□□□□□ -1.44
VPS50-220ENST00000544910 TRIML2Q8N7C3 387 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 ALG3Q92685 438 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 TNIP3Q96KP6 325 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 PAFAH2Q99487 392 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 CYP3A43Q9HB55 503 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 RXFP1Q9HBX9 757 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 ITGA11Q9UKX5 1188 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 SHOC2Q9UQ13 582 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 USP20Q9Y2K6 914 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 LIASO43766 372 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 ATP6V1G2O95670 118 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 CCNE2O96020 404 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 CD4P01730 458 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 TGFB3P10600 412 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 MCF2P10911 925 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 TGM2P21980 687 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 STIP1P31948 543 aaKnown RBP6.04□□□□□ -1.44
VPS50-220ENST00000544910 HOXD13P35453 343 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 AUHQ13825 339 aaKnown RBP6.04□□□□□ -1.44
VPS50-220ENST00000544910 CNGA2Q16280 664 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 KRT80Q6KB66 452 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 HELQQ8TDG4 1101 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 BSNDQ8WZ55 320 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 OSBPL1AQ9BXW6 950 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 WWP1Q9H0M0 922 aa6.04□□□□□ -1.44
VPS50-220ENST00000544910 ARHGEF37A1IGU5 675 aa6.03□□□□□ -1.44
VPS50-220ENST00000544910 GIPC1O14908 333 aa6.03□□□□□ -1.44
VPS50-220ENST00000544910 FSCN2O14926 492 aa6.03□□□□□ -1.44
VPS50-220ENST00000544910 TM9SF1O15321 606 aa6.03□□□□□ -1.44
VPS50-220ENST00000544910 GJB6O95452 261 aa6.03□□□□□ -1.44
VPS50-220ENST00000544910 PGK2P07205 417 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms