RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 TCP11X1B4DZS4 312 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 NDC80O14777 642 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 ALOX15BO15296 676 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 MIPP30301 263 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 SF3A3Q12874 501 aaKnown RBP eCLIP18.92■□□□□ 0.62
VIM-209ENST00000544301 HP1BP3Q5SSJ5 553 aaPredicted RBP18.92■□□□□ 0.62
VIM-209ENST00000544301 LDLRAD1Q5T700 205 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 C9orf131Q5VYM1 1079 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 CMASQ8NFW8 434 aaPredicted RBP18.92■□□□□ 0.62
VIM-209ENST00000544301 CKAP2Q8WWK9 683 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 NLRP7Q8WX94 980 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 C10orf88Q9H8K7 445 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 MLXIPLQ9NP71 852 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 ITGA11Q9UKX5 1188 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 BARX2Q9UMQ3 279 aaPredicted RBP18.92■□□□□ 0.62
VIM-209ENST00000544301 PLXNA1Q9UIW2 1896 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 EXOC1LA0A1B0GW35 172 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 TSPAN1O60635 241 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 EPHX2P34913 555 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 ADCYAP1R1P41586 468 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 PDE4CQ08493 712 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 INCA1Q0VD86 236 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 ACAP1Q15027 740 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 TMED2Q15363 201 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 TAX1BP1Q86VP1 789 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 KCTD6Q8NC69 237 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 UBA3Q8TBC4 463 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 GTF3C2Q8WUA4 911 aaPredicted RBP18.92■□□□□ 0.62
VIM-209ENST00000544301 DPP3Q9NY33 737 aa18.92■□□□□ 0.62
VIM-209ENST00000544301 FARP1Q9Y4F1 1045 aaPredicted RBP18.92■□□□□ 0.62
VIM-209ENST00000544301 TRUB2O95900 331 aaKnown RBP18.91■□□□□ 0.62
VIM-209ENST00000544301 GHRP10912 638 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 CYP3A5P20815 502 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 NDST1P52848 882 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 GDF10P55107 478 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 CCNA1P78396 465 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 RBP5P82980 135 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 TAF5Q15542 800 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 FAM102AQ5T9C2 384 aaPredicted RBP18.91■□□□□ 0.62
VIM-209ENST00000544301 CENPUQ71F23 418 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 DPH6Q7L8W6 267 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 TDRPQ86YL5 185 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 ACAP3Q96P50 834 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 ADPGKQ9BRR6 497 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 KATNBL1Q9H079 304 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 USP18Q9UMW8 372 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 C2CD2Q9Y426 696 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 RNF8O76064 485 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 SCTRP47872 440 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 PCGF5Q86SE9 256 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 RFX6Q8HWS3 928 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 ZBED8Q8IZ13 594 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 GDAP1Q8TB36 358 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 HSPH1Q92598 858 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 ASNSD1Q9NWL6 643 aa18.91■□□□□ 0.62
VIM-209ENST00000544301 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.91■□□□□ 0.62
VIM-209ENST00000544301 A0A1B0GUA9 196 aa18.9■□□□□ 0.62
VIM-209ENST00000544301 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.9■□□□□ 0.62
VIM-209ENST00000544301 RASA4BC9J798 803 aa18.9■□□□□ 0.62
VIM-209ENST00000544301 H3BRB1 525 aa18.9■□□□□ 0.62
VIM-209ENST00000544301 RASA4O43374 803 aa18.9■□□□□ 0.62
VIM-209ENST00000544301 SNX3O60493 162 aa18.9■□□□□ 0.62
VIM-209ENST00000544301 STAU1O95793 577 aaKnown RBP18.9■□□□□ 0.62
VIM-209ENST00000544301 OAS1P00973 400 aaKnown RBP18.9■□□□□ 0.62
VIM-209ENST00000544301 CTCFP49711 727 aaPredicted RBP18.9■□□□□ 0.62
VIM-209ENST00000544301 ZNF143P52747 638 aaPredicted RBP18.9■□□□□ 0.62
VIM-209ENST00000544301 PDIA2Q13087 525 aaKnown RBP18.9■□□□□ 0.62
VIM-209ENST00000544301 SLC10A4Q96EP9 437 aa18.9■□□□□ 0.62
VIM-209ENST00000544301 L3MBTL3Q96JM7 780 aaPredicted RBP18.9■□□□□ 0.62
VIM-209ENST00000544301 TUT1Q9H6E5 874 aaKnown RBP18.9■□□□□ 0.62
VIM-209ENST00000544301 VPS37BQ9H9H4 285 aa18.9■□□□□ 0.62
VIM-209ENST00000544301 FGFR1OP2Q9NVK5 253 aa18.9■□□□□ 0.62
VIM-209ENST00000544301 GOLGA8MH3BSY2 632 aa18.89■□□□□ 0.62
VIM-209ENST00000544301 HNRNPH1P31943 449 aaKnown RBP18.89■□□□□ 0.62
VIM-209ENST00000544301 RPL22P35268 128 aaKnown RBP18.89■□□□□ 0.62
VIM-209ENST00000544301 PCK1P35558 622 aa18.89■□□□□ 0.62
VIM-209ENST00000544301 MARCH8Q5T0T0 291 aa18.89■□□□□ 0.62
VIM-209ENST00000544301 LCLAT1Q6UWP7 414 aa18.89■□□□□ 0.62
VIM-209ENST00000544301 ARHGEF18Q6ZSZ5 1173 aa18.89■□□□□ 0.62
VIM-209ENST00000544301 PPIL6Q8IXY8 311 aa18.89■□□□□ 0.62
VIM-209ENST00000544301 RSAD2Q8WXG1 361 aa18.89■□□□□ 0.62
VIM-209ENST00000544301 CPT1BQ92523 772 aa18.89■□□□□ 0.62
VIM-209ENST00000544301 PEBP4Q96S96 227 aa18.89■□□□□ 0.62
VIM-209ENST00000544301 NKIRAS1Q9NYS0 192 aa18.89■□□□□ 0.62
VIM-209ENST00000544301 PLXNB2O15031 1838 aa18.89■□□□□ 0.61
VIM-209ENST00000544301 POC1B-GALNT4F8VUJ3 575 aa18.89■□□□□ 0.61
VIM-209ENST00000544301 APOC4-APOC2K7ER74 178 aa18.89■□□□□ 0.61
VIM-209ENST00000544301 ATP2C2O75185 946 aa18.89■□□□□ 0.61
VIM-209ENST00000544301 SNAI1O95863 264 aaPredicted RBP18.89■□□□□ 0.61
VIM-209ENST00000544301 APOC2P02655 101 aa18.89■□□□□ 0.61
VIM-209ENST00000544301 GAD2Q05329 585 aa18.89■□□□□ 0.61
VIM-209ENST00000544301 ADCY1Q08828 1119 aa18.89■□□□□ 0.61
VIM-209ENST00000544301 NR1H3Q13133 447 aa18.89■□□□□ 0.61
VIM-209ENST00000544301 HIF1AQ16665 826 aa18.89■□□□□ 0.61
VIM-209ENST00000544301 SH3PXD2AQ5TCZ1 1133 aa18.89■□□□□ 0.61
VIM-209ENST00000544301 ANKRD22Q5VYY1 191 aa18.89■□□□□ 0.61
VIM-209ENST00000544301 TRABD2AQ86V40 505 aa18.89■□□□□ 0.61
VIM-209ENST00000544301 NT5DC4Q86YG4 428 aa18.89■□□□□ 0.61
VIM-209ENST00000544301 UNC45BQ8IWX7 931 aa18.89■□□□□ 0.61
VIM-209ENST00000544301 NAT8LQ8N9F0 302 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms