RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 ZNF112Q9UJU3 913 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 LZTS1Q9Y250 596 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 ZCCHC18P0CG32 403 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 RPA1P27694 616 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 CLK3P49761 638 aaKnown RBP11.62□□□□□ -0.55
CDH3-203ENST00000542274 KPNA1P52294 538 aaPredicted RBP11.62□□□□□ -0.55
CDH3-203ENST00000542274 ZNF423Q2M1K9 1284 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 BBOF1Q8ND07 529 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 ATL1Q8WXF7 558 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 DCPSQ96C86 337 aaKnown RBP11.62□□□□□ -0.55
CDH3-203ENST00000542274 KLHL29Q96CT2 875 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 MRRFQ96E11 262 aaKnown RBP11.62□□□□□ -0.55
CDH3-203ENST00000542274 ZNF333Q96JL9 665 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 ERGIC2Q96RQ1 377 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 KCTD10Q9H3F6 313 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 TIMMDC1Q9NPL8 285 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 WASH6PQ9NQA3 447 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 ARHGAP20Q9P2F6 1191 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 VANGL2Q9ULK5 521 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 PCDHGA11Q9Y5H2 935 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 PARP14Q460N5 1801 aa11.62□□□□□ -0.55
CDH3-203ENST00000542274 FAM170AA1A519 330 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 FUOMA2VDF0 154 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 LRRC53A6NM62 1247 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 GCOM1H8Y6P7 765 aaPredicted RBP11.61□□□□□ -0.55
CDH3-203ENST00000542274 SRGAP2O75044 1071 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 GMNNO75496 209 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 USP2O75604 605 aaPredicted RBP11.61□□□□□ -0.55
CDH3-203ENST00000542274 OR5F1O95221 314 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 POLR2MP0CAP2 368 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 UBTFL6P0CB48 400 aaPredicted RBP11.61□□□□□ -0.55
CDH3-203ENST00000542274 HPDP32754 393 aaPredicted RBP11.61□□□□□ -0.55
CDH3-203ENST00000542274 CIITAP33076 1130 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 KRT20P35900 424 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 ZNF135P52742 658 aaPredicted RBP11.61□□□□□ -0.55
CDH3-203ENST00000542274 LRRC63Q05C16 580 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 MAN2A1Q16706 1144 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 CYP4A22Q5TCH4 519 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 HAUS3Q68CZ6 603 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 SPOPLQ6IQ16 392 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 RRAGAQ7L523 313 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 OTOP1Q7RTM1 612 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 FAM160B2Q86V87 743 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 SULF1Q8IWU6 871 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 ANKS4BQ8N8V4 417 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 PSD4Q8NDX1 1056 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 NAPGQ99747 312 aaPredicted RBP11.61□□□□□ -0.55
CDH3-203ENST00000542274 NEURL2Q9BR09 285 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 DNM3Q9UQ16 869 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 MACROD2A1Z1Q3 448 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 SMIM23A6NLE4 172 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 CLIC2O15247 247 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 NVLO15381 856 aaKnown RBP11.61□□□□□ -0.55
CDH3-203ENST00000542274 SLITRK3O94933 977 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 KRT75O95678 551 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 FOSP01100 380 aaPredicted RBP11.61□□□□□ -0.55
CDH3-203ENST00000542274 ADSLP30566 484 aaPredicted RBP11.61□□□□□ -0.55
CDH3-203ENST00000542274 MLLT6P55198 1093 aaPredicted RBP11.61□□□□□ -0.55
CDH3-203ENST00000542274 POLR2GP62487 172 aaKnown RBP eCLIP11.61□□□□□ -0.55
CDH3-203ENST00000542274 PTK2Q05397 1052 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 KDSRQ06136 332 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 MEA1Q16626 185 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 LDLRAD1Q5T700 205 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 NDUFAF5Q5TEU4 345 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 MOXD1Q6UVY6 613 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 CACNA2D4Q7Z3S7 1137 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 CARNMT1Q8N4J0 409 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 CCDC89Q8N998 374 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 PDZD8Q8NEN9 1154 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 MDM1Q8TC05 714 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 PTCD2Q8WV60 388 aaKnown RBP11.61□□□□□ -0.55
CDH3-203ENST00000542274 NAP1L4Q99733 375 aaKnown RBP11.61□□□□□ -0.55
CDH3-203ENST00000542274 COQ7Q99807 217 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 CCDC28BQ9BUN5 200 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 TAF1DQ9H5J8 278 aaPredicted RBP11.61□□□□□ -0.55
CDH3-203ENST00000542274 DDX18Q9NVP1 670 aaKnown RBP11.61□□□□□ -0.55
CDH3-203ENST00000542274 CLIC5Q9NZA1 410 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 COL4A3BPQ9Y5P4 624 aa11.61□□□□□ -0.55
CDH3-203ENST00000542274 PIK3CDO00329 1044 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 S100A6P06703 90 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 MAN1A1P33908 653 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 BACE1P56817 501 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 FKBP3Q00688 224 aaKnown RBP11.6□□□□□ -0.55
CDH3-203ENST00000542274 VGLL4Q14135 290 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 EPHA7Q15375 998 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 SF3B4Q15427 424 aaKnown RBP eCLIP11.6□□□□□ -0.55
CDH3-203ENST00000542274 KLHL38Q2WGJ6 581 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 ANO4Q32M45 955 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 HABP4Q5JVS0 413 aaKnown RBP11.6□□□□□ -0.55
CDH3-203ENST00000542274 INTS8Q75QN2 995 aaKnown RBP11.6□□□□□ -0.55
CDH3-203ENST00000542274 MARK2Q7KZI7 788 aaKnown RBP11.6□□□□□ -0.55
CDH3-203ENST00000542274 NUP93Q8N1F7 819 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 LZTR1Q8N653 840 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 CALML6Q8TD86 181 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 GIPC3Q8TF64 312 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 INTS12Q96CB8 462 aaKnown RBP11.6□□□□□ -0.55
CDH3-203ENST00000542274 ATG4CQ96DT6 458 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 NELL2Q99435 816 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 TSG101Q99816 390 aa11.6□□□□□ -0.55
CDH3-203ENST00000542274 ECT2Q9H8V3 914 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms