RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 PCDHB8Q9UN66 801 aa9.35□□□□□ -0.91
CLSTN3-212ENST00000541770 SLC27A5Q9Y2P5 690 aa9.35□□□□□ -0.91
CLSTN3-212ENST00000541770 C2CD2Q9Y426 696 aa9.35□□□□□ -0.91
CLSTN3-212ENST00000541770 F5P12259 2224 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 GOLGA8IPA6NC78 632 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 GOLGA8JA6NMD2 632 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 C4orf47A7E2U8 309 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 LACTBL1A8MY62 500 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 XPOTO43592 962 aaKnown RBP9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 EXOC3O60645 756 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 ATG13O75143 517 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 SOAT2O75908 522 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 CD44P16070 742 aaKnown RBP9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 CYP3A5P20815 502 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 NR2F2P24468 414 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 RAP1GAPP47736 663 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 CYP2J2P51589 502 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 NLRP12P59046 1061 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 CYP4F8P98187 520 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 ENPEPQ07075 957 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 ZNF252P-AS1Q0IIN9 211 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 ACAP1Q15027 740 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 SURF1Q15526 300 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 ZBTB6Q15916 424 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 TAF12Q16514 161 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 SNRNP35Q16560 246 aaKnown RBP9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 SKOR2Q2VWA4 1001 aaPredicted RBP9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 ITPRIPL2Q3MIP1 535 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 CT47A1Q5JQC4 288 aaPredicted RBP9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 DSTYKQ6XUX3 929 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 TMC8Q8IU68 726 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 ZC3H3Q8IXZ2 948 aaKnown RBP9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 SYNPOQ8N3V7 929 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 LRRC3BQ96PB8 259 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 HHIPQ96QV1 700 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 TMEM209Q96SK2 561 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 TSG101Q99816 390 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 LRRC3Q9BY71 257 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 SMG9Q9H0W8 520 aaKnown RBP9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 DNAJC25Q9H1X3 360 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 CRISPLD1Q9H336 500 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 POLR3BQ9NW08 1133 aaPredicted RBP9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 THG1LQ9NWX6 298 aaKnown RBP9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 RBAKQ9NYW8 714 aaPredicted RBP9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 TMEM63CQ9P1W3 806 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 TUBGCP4Q9UGJ1 667 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 MAFFQ9ULX9 164 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 UBQLN1Q9UMX0 589 aaKnown RBP9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 NUP205Q92621 2012 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 MYO16Q9Y6X6 1858 aa9.34□□□□□ -0.91
CLSTN3-212ENST00000541770 DENND4CQ5VZ89 1909 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 BICDL2A1A5D9 508 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 DCLK1O15075 740 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 RNF40O75150 1001 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 TOP3BO95985 862 aaKnown RBP9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 LRPAP1P30533 357 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 HOXA6P31267 233 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 GBP1P32455 592 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 MCCD1P59942 119 aaPredicted RBP9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 FKBP3Q00688 224 aaKnown RBP9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 PLCB2Q00722 1185 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 CYP24A1Q07973 514 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 GRSF1Q12849 480 aaKnown RBP eCLIP9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 PAK1Q13153 545 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 ADAM9Q13443 819 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 PSMD6Q15008 389 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 ELF2Q15723 593 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 PLA2G2CQ5R387 149 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 DAB2IPQ5VWQ8 1189 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 SPATA1Q5VX52 437 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 ANKRD40Q6AI12 368 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 JADE1Q6IE81 842 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 TTI2Q6NXR4 508 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 CAVIN1Q6NZI2 390 aaKnown RBP9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 DNAJB7Q7Z6W7 309 aaPredicted RBP9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 CBWD2Q8IUF1 395 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 TTC16Q8NEE8 873 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 NELFBQ8WX92 580 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 FAM212AQ96EL1 285 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 KIF12Q96FN5 646 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 GCNAQ96QF7 691 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 SEPT5Q99719 369 aaPredicted RBP9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 MKNK1Q9BUB5 465 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 GKN1Q9NS71 199 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 DACH1Q9UI36 760 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 INVSQ9Y283 1065 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 FRMD4BQ9Y2L6 1034 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 PCDHGA5Q9Y5G8 931 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 THADAQ6YHU6 1953 aa9.33□□□□□ -0.92
CLSTN3-212ENST00000541770 SDK1Q7Z5N4 2213 aa9.32□□□□□ -0.92
CLSTN3-212ENST00000541770 USP24Q9UPU5 2620 aa9.32□□□□□ -0.92
CLSTN3-212ENST00000541770 MTMR11A4FU01 709 aa9.32□□□□□ -0.92
CLSTN3-212ENST00000541770 TRIM49BA6NDI0 452 aa9.32□□□□□ -0.92
CLSTN3-212ENST00000541770 CETN3O15182 167 aa9.32□□□□□ -0.92
CLSTN3-212ENST00000541770 RHOBTB1O94844 696 aa9.32□□□□□ -0.92
CLSTN3-212ENST00000541770 LETM1O95202 739 aaPredicted RBP9.32□□□□□ -0.92
CLSTN3-212ENST00000541770 VNN2O95498 520 aa9.32□□□□□ -0.92
CLSTN3-212ENST00000541770 PRAMEF12O95522 483 aa9.32□□□□□ -0.92
CLSTN3-212ENST00000541770 CAVIN2O95810 425 aa9.32□□□□□ -0.92
CLSTN3-212ENST00000541770 EGFP01133 1207 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms