RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 TAP1Q03518 808 aa15.29■□□□□ 0.04
CLIP1-216ENST00000541410 TAF2Q6P1X5 1199 aa15.29■□□□□ 0.04
CLIP1-216ENST00000541410 RCOR2Q8IZ40 523 aa15.29■□□□□ 0.04
CLIP1-216ENST00000541410 GLIS1Q8NBF1 620 aa15.29■□□□□ 0.04
CLIP1-216ENST00000541410 RNF169Q8NCN4 708 aa15.29■□□□□ 0.04
CLIP1-216ENST00000541410 IPO4Q8TEX9 1081 aaKnown RBP15.29■□□□□ 0.04
CLIP1-216ENST00000541410 CLEC4CQ8WTT0 213 aa15.29■□□□□ 0.04
CLIP1-216ENST00000541410 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.29■□□□□ 0.04
CLIP1-216ENST00000541410 FAXDC2Q96IV6 333 aa15.29■□□□□ 0.04
CLIP1-216ENST00000541410 AGO3Q9H9G7 860 aaKnown RBP15.29■□□□□ 0.04
CLIP1-216ENST00000541410 DNPEPQ9ULA0 475 aa15.29■□□□□ 0.04
CLIP1-216ENST00000541410 H0YGN5 161 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 ATP2C2O75185 946 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 GABBR2O75899 941 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 ETS1P14921 441 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 ACAT1P24752 427 aaKnown RBP15.28■□□□□ 0.04
CLIP1-216ENST00000541410 THPOP40225 353 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 ATP1A2P50993 1020 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 SLC25A11Q02978 314 aaKnown RBP15.28■□□□□ 0.04
CLIP1-216ENST00000541410 ZNF268Q14587 947 aaPredicted RBP15.28■□□□□ 0.04
CLIP1-216ENST00000541410 GSTA5Q7RTV2 222 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 NME8Q8N427 588 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 LRRC52Q8N7C0 313 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 MCRS1Q96EZ8 462 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 CFAP57Q96MR6 1250 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 GAD1Q99259 594 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 SEMA4AQ9H3S1 761 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 SPC25Q9HBM1 224 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 BCCIPQ9P287 314 aaKnown RBP eCLIP15.28■□□□□ 0.04
CLIP1-216ENST00000541410 NFS1Q9Y697 457 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 TP73O15350 636 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 SHBGP04278 402 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 ZSCAN5DPP0CG00 497 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 MIPP30301 263 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 GNL1P36915 607 aaPredicted RBP15.28■□□□□ 0.04
CLIP1-216ENST00000541410 ZNF844Q08AG5 666 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 PCBP1Q15365 356 aaKnown RBP eCLIP15.28■□□□□ 0.04
CLIP1-216ENST00000541410 B4GALNT4Q76KP1 1039 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 FAM76AQ8TAV0 307 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 EXOC4Q96A65 974 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 RBM41Q96IZ5 413 aaKnown RBP15.28■□□□□ 0.04
CLIP1-216ENST00000541410 GRIN2DO15399 1336 aa15.28■□□□□ 0.04
CLIP1-216ENST00000541410 DCAF8L1A6NGE4 600 aa15.27■□□□□ 0.04
CLIP1-216ENST00000541410 SMIM23A6NLE4 172 aa15.27■□□□□ 0.04
CLIP1-216ENST00000541410 GOLGA8KD6RF30 607 aa15.27■□□□□ 0.04
CLIP1-216ENST00000541410 ADAMTS4O75173 837 aa15.27■□□□□ 0.04
CLIP1-216ENST00000541410 PDGFRAP16234 1089 aa15.27■□□□□ 0.04
CLIP1-216ENST00000541410 ADCY8P40145 1251 aa15.27■□□□□ 0.04
CLIP1-216ENST00000541410 CDKN2BP42772 138 aa15.27■□□□□ 0.04
CLIP1-216ENST00000541410 GABRB2P47870 512 aa15.27■□□□□ 0.04
CLIP1-216ENST00000541410 RABGGTBP53611 331 aa15.27■□□□□ 0.04
CLIP1-216ENST00000541410 TFDP3Q5H9I0 405 aa15.27■□□□□ 0.04
CLIP1-216ENST00000541410 NIPA2Q8N8Q9 360 aa15.27■□□□□ 0.04
CLIP1-216ENST00000541410 UBE2Q2Q8WVN8 375 aa15.27■□□□□ 0.04
CLIP1-216ENST00000541410 RXFP2Q8WXD0 754 aa15.27■□□□□ 0.04
CLIP1-216ENST00000541410 PEBP4Q96S96 227 aa15.27■□□□□ 0.04
CLIP1-216ENST00000541410 MIOSQ9NXC5 875 aa15.27■□□□□ 0.04
CLIP1-216ENST00000541410 TRPV2Q9Y5S1 764 aa15.27■□□□□ 0.04
CLIP1-216ENST00000541410 hCG_1818297A0A087WSY0 165 aa15.27■□□□□ 0.03
CLIP1-216ENST00000541410 KIF3CO14782 793 aa15.27■□□□□ 0.03
CLIP1-216ENST00000541410 PPFIA2O75334 1257 aa15.27■□□□□ 0.03
CLIP1-216ENST00000541410 CD4P01730 458 aa15.27■□□□□ 0.03
CLIP1-216ENST00000541410 GHRP10912 638 aa15.27■□□□□ 0.03
CLIP1-216ENST00000541410 KCNE1P15382 129 aa15.27■□□□□ 0.03
CLIP1-216ENST00000541410 CAPN2P17655 700 aa15.27■□□□□ 0.03
CLIP1-216ENST00000541410 TAF6P49848 677 aa15.27■□□□□ 0.03
CLIP1-216ENST00000541410 PMS2P54278 862 aa15.27■□□□□ 0.03
CLIP1-216ENST00000541410 DRG2P55039 364 aaKnown RBP15.27■□□□□ 0.03
CLIP1-216ENST00000541410 LILRA4P59901 499 aa15.27■□□□□ 0.03
CLIP1-216ENST00000541410 CALCOCO2Q13137 446 aa15.27■□□□□ 0.03
CLIP1-216ENST00000541410 APPL2Q8NEU8 664 aa15.27■□□□□ 0.03
CLIP1-216ENST00000541410 ATL2Q8NHH9 583 aa15.27■□□□□ 0.03
CLIP1-216ENST00000541410 MAIP1Q8WWC4 291 aa15.27■□□□□ 0.03
CLIP1-216ENST00000541410 TXLNGYQ9BZA5 131 aa15.27■□□□□ 0.03
CLIP1-216ENST00000541410 EPB41L4BQ9H329 900 aa15.27■□□□□ 0.03
CLIP1-216ENST00000541410 RABEP2Q9H5N1 569 aa15.27■□□□□ 0.03
CLIP1-216ENST00000541410 TRMT13Q9NUP7 481 aaKnown RBP15.27■□□□□ 0.03
CLIP1-216ENST00000541410 FAM105AQ9NUU6 356 aa15.27■□□□□ 0.03
CLIP1-216ENST00000541410 WDR35Q9P2L0 1181 aa15.27■□□□□ 0.03
CLIP1-216ENST00000541410 TIMM13Q9Y5L4 95 aaPredicted RBP15.27■□□□□ 0.03
CLIP1-216ENST00000541410 C3orf70A6NLC5 250 aaPredicted RBP15.26■□□□□ 0.03
CLIP1-216ENST00000541410 CLDN5O00501 218 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 LCP1P13796 627 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 TFE3P19532 575 aaPredicted RBP15.26■□□□□ 0.03
CLIP1-216ENST00000541410 CHKAP35790 457 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 CETN2P41208 172 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 ITGA8P53708 1063 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 PLCB3Q01970 1234 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 MMRN1Q13201 1228 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 CCNG2Q16589 344 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 PTGISQ16647 500 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 SCYL2Q6P3W7 929 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 OSTM1Q86WC4 334 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 TAB3Q8N5C8 712 aaPredicted RBP15.26■□□□□ 0.03
CLIP1-216ENST00000541410 GSTCDQ8NEC7 633 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 SLC2A14Q8TDB8 520 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 NDRG1Q92597 394 aaKnown RBP15.26■□□□□ 0.03
CLIP1-216ENST00000541410 ART4Q93070 314 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 PAAF1Q9BRP4 392 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 CALN1Q9BXU9 219 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms