RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 NOTCH4Q99466 2003 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 SPTBN5Q9NRC6 3674 aaKnown RBP11.18□□□□□ -0.62
VPS33A-204ENST00000540669 TCRBV5S1A1TA0A578 114 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 FAM92AA1XBS5 289 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 SOWAHDA6NJG2 315 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 HIDE1A8MVS5 230 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 GOLGA6L6A8MZA4 724 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 EIF3CLB5ME19 914 aaKnown RBP11.18□□□□□ -0.62
VPS33A-204ENST00000540669 ARHGAP6O43182 974 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 MICAL2O94851 1124 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 POU2F2P09086 479 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 PDGFRBP09619 1106 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 OR4Q2P0C623 313 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 GZMAP12544 262 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 SKILP12757 684 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 IGFBP4P22692 258 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 EIF4A3P38919 411 aaKnown RBP11.18□□□□□ -0.62
VPS33A-204ENST00000540669 KIF11P52732 1056 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 BCAT1P54687 386 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 GPM6BQ13491 265 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 SMC1AQ14683 1233 aaKnown RBP11.18□□□□□ -0.62
VPS33A-204ENST00000540669 MTF1Q14872 753 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 CLEC16AQ2KHT3 1053 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 RAB41Q5JT25 222 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 DENND1BQ6P3S1 775 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 VSTM1Q6UX27 236 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 MON1BQ7L1V2 547 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 PHF13Q86YI8 300 aaPredicted RBP11.18□□□□□ -0.62
VPS33A-204ENST00000540669 GPIHBP1Q8IV16 184 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 GLYCTKQ8IVS8 523 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 THEM5Q8N1Q8 247 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 ANKRD52Q8NB46 1076 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 SPPL2BQ8TCT7 592 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 AUTS2Q8WXX7 1259 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 ARNTL2Q8WYA1 636 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 ANP32BQ92688 251 aaKnown RBP11.18□□□□□ -0.62
VPS33A-204ENST00000540669 PPP2R3CQ969Q6 453 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 CYFIP2Q96F07 1278 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 CEP295NLQ96MC4 621 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 EIF3CQ99613 913 aaKnown RBP11.18□□□□□ -0.62
VPS33A-204ENST00000540669 SMOQ99835 787 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 BAG1Q99933 345 aaPredicted RBP11.18□□□□□ -0.62
VPS33A-204ENST00000540669 TCF25Q9BQ70 676 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 SLC4A5Q9BY07 1137 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 UBXN6Q9BZV1 441 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 NHEJ1Q9H9Q4 299 aaPredicted RBP11.18□□□□□ -0.62
VPS33A-204ENST00000540669 MRPL17Q9NRX2 175 aaKnown RBP11.18□□□□□ -0.62
VPS33A-204ENST00000540669 FAM49BQ9NUQ9 324 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 MTMR10Q9NXD2 777 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 IL37Q9NZH6 218 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 AFF4Q9UHB7 1163 aaKnown RBP11.18□□□□□ -0.62
VPS33A-204ENST00000540669 NAGPAQ9UK23 515 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 FBXW11Q9UKB1 542 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 PCDHGC5Q9Y5F6 944 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 PRRC2BQ5JSZ5 2229 aaKnown RBP11.18□□□□□ -0.62
VPS33A-204ENST00000540669 EYSQ5T1H1 3165 aa11.18□□□□□ -0.62
VPS33A-204ENST00000540669 ANAPC1Q9H1A4 1944 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 TULP1O00294 542 aaPredicted RBP11.17□□□□□ -0.62
VPS33A-204ENST00000540669 TNFRSF10BO14763 440 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 XPO1O14980 1071 aaKnown RBP11.17□□□□□ -0.62
VPS33A-204ENST00000540669 THAP12O43422 761 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 SLC34A2O95436 690 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 ATF2P15336 505 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 NPR3P17342 541 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 RPL17P18621 184 aaKnown RBP11.17□□□□□ -0.62
VPS33A-204ENST00000540669 MMP8P22894 467 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 GABRB2P47870 512 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 BST2Q10589 180 aaKnown RBP11.17□□□□□ -0.62
VPS33A-204ENST00000540669 PDCLQ13371 301 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 GOLGA7BQ2TAP0 167 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 PTPN20Q4JDL3 420 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 HS1BP3Q53T59 392 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 RNF19BQ6ZMZ0 732 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 C4orf50Q6ZRC1 276 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 BHLHA9Q7RTU4 235 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 TCEAL8Q8IYN2 117 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 DCP1BQ8IZD4 617 aaKnown RBP11.17□□□□□ -0.62
VPS33A-204ENST00000540669 HS6ST3Q8IZP7 471 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 SCML4Q8N228 414 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 TTC9BQ8N6N2 239 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 ZNF461Q8TAF7 563 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 GDPD5Q8WTR4 605 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 SLC22A17Q8WUG5 538 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 KCTD13Q8WZ19 329 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 SMARCD1Q96GM5 515 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 C8orf48Q96LL4 319 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 KLHL5Q96PQ7 755 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 CDX2Q99626 313 aaPredicted RBP11.17□□□□□ -0.62
VPS33A-204ENST00000540669 DUSP16Q9BY84 665 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 RHOBTB2Q9BYZ6 727 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 KRT82Q9NSB4 513 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 PUF60Q9UHX1 559 aaKnown RBP11.17□□□□□ -0.62
VPS33A-204ENST00000540669 MTUS1Q9ULD2 1270 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 C2orf16Q68DN1 1984 aa11.17□□□□□ -0.62
VPS33A-204ENST00000540669 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.16□□□□□ -0.62
VPS33A-204ENST00000540669 TULP2O00295 520 aa11.16□□□□□ -0.62
VPS33A-204ENST00000540669 CLDN5O00501 218 aa11.16□□□□□ -0.62
VPS33A-204ENST00000540669 MED7O43513 233 aa11.16□□□□□ -0.62
VPS33A-204ENST00000540669 BEST1O76090 585 aa11.16□□□□□ -0.62
VPS33A-204ENST00000540669 NDUFA10O95299 355 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms