RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	DDR2	Q16832	855 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	KCNV1	Q6PIU1	500 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	EIF3M	Q7L2H7	374 aa	Known RBP	9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	SLCO6A1	Q86UG4	719 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	RAB43	Q86YS6	212 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	ACTRT1	Q8TDG2	376 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	BTN2A2	Q8WVV5	523 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	FAR1	Q8WVX9	515 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	ZC3H10	Q96K80	434 aa	Known RBP	9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	ADPGK	Q9BRR6	497 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	WHRN	Q9P202	907 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	SLC9A2	Q9UBY0	812 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	RTCB	Q9Y3I0	505 aa	Known RBP	9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	TFEC	O14948	347 aa	Predicted RBP	9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	RIPK2	O43353	540 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	FOS	P01100	380 aa	Predicted RBP	9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	NR3C1	P04150	777 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	ATP5B	P06576	529 aa	Known RBP	9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	HOXB7	P09629	217 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	FGFR3	P22607	806 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	ADSS	P30520	456 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	GP5	P40197	560 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	SLC5A3	P53794	718 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	HPCA	P84074	193 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	AAGAB	Q6PD74	315 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	FAM180A	Q6UWF9	173 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	KCNK18	Q7Z418	384 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	NEDD1	Q8NHV4	660 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	FAM149B1	Q96BN6	582 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	INTS2	Q9H0H0	1204 aa	Known RBP	9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	CASS4	Q9NQ75	786 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	ZNF232	Q9UNY5	417 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	SH3TC1	Q8TE82	1336 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	TNPO2	O14787	897 aa	Known RBP	9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	SYNCRIP	O60506	623 aa	Known RBP	9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	SHOX2	O60902	331 aa	Predicted RBP	9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	CAMTA2	O94983	1202 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	ITGA6	P23229	1130 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	SPIRE1	Q08AE8	756 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	C1D	Q13901	141 aa	Known RBP	9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	QPCT	Q16769	361 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	AARS2	Q5JTZ9	985 aa	Known RBP	9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	HEATR6	Q6AI08	1181 aa	Known RBP	9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	FRMD7	Q6ZUT3	714 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	CDKL3	Q8IVW4	592 aa	Predicted RBP	9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	PHC2	Q8IXK0	858 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	CKAP2	Q8WWK9	683 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	SEMA4A	Q9H3S1	761 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	PIGU	Q9H490	435 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	GOLPH3	Q9H4A6	298 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	DYRK4	Q9NR20	520 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	ADGRL1	O94910	1474 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	PARN	O95453	639 aa	Known RBP	9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	PROC	P04070	461 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	FOSL1	P15407	271 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	CENPC	Q03188	943 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	MROH9	Q5TGP6	573 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	SZRD1	Q7Z422	152 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	DHFR2	Q86XF0	187 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	RCOR2	Q8IZ40	523 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	SNX31	Q8N9S9	440 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	SETD9	Q8NE22	299 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	ZHX1-C8orf76	Q96EF9	292 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	PRDM11	Q9NQV5	511 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	UGGT2	Q9NYU1	1516 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	ZSCAN5B	A6NJL1	495 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	SSNA1	O43805	119 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	RBM20	Q5T481	1227 aa	Known RBP	9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	CAMK1D	Q8IU85	385 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	BBS5	Q8N3I7	341 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	GUF1	Q8N442	669 aa	Known RBP	9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	PDPR	Q8NCN5	879 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	PI4K2B	Q8TCG2	481 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	C18orf8	Q96DM3	657 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	NSMCE3	Q96MG7	304 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	OSBPL11	Q9BXB4	747 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	ASNSD1	Q9NWL6	643 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	RGS17	Q9UGC6	210 aa	Predicted RBP	9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	NUP50	Q9UKX7	468 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	JAG2	Q9Y219	1238 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	SUGT1	Q9Y2Z0	365 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	PDS5A	Q29RF7	1337 aa	Known RBP	9.07	□□□□□ -0.96
YBX3-208	ENST00000540447		H3BNX3	289 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	LDLR	P01130	860 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	PRKCB	P05771	671 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	MAG	P20916	626 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	GCKR	Q14397	625 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	RBM43	Q6ZSC3	357 aa	Known RBP	9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	SAPCD2	Q86UD0	394 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	OR8H3	Q8N146	312 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	SFRP1	Q8N474	314 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	FAM13C	Q8NE31	585 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	ASAP3	Q8TDY4	903 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	DNAJC7	Q99615	494 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	FAM213A	Q9BRX8	229 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	UBXN6	Q9BZV1	441 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	DCLK3	Q9C098	648 aa		9.07	□□□□□ -0.96
YBX3-208	ENST00000540447	NGRN	Q9NPE2	291 aa	Known RBP	9.07	□□□□□ -0.96

Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms