RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 SMARCAD1Q9H4L7 1026 aa17.76■□□□□ 0.43
USP28-208ENST00000540438 PDZD7Q9H5P4 517 aa17.76■□□□□ 0.43
USP28-208ENST00000540438 PTPRHQ9HD43 1115 aa17.76■□□□□ 0.43
USP28-208ENST00000540438 TCRBV5S1A1TA0A578 114 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 A6NNZ2 444 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 DNALI1O14645 258 aaPredicted RBP17.75■□□□□ 0.43
USP28-208ENST00000540438 ADCY6O43306 1168 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 TMEM63AO94886 807 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 YBX3P16989 372 aaKnown RBP eCLIP17.75■□□□□ 0.43
USP28-208ENST00000540438 ADORA2BP29275 332 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 TTLL4Q14679 1199 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 CA9Q16790 459 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 TUBB8Q3ZCM7 444 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 TSHZ1Q6ZSZ6 1077 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 ILDR2Q71H61 639 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 ALLCQ8N6M5 410 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 CCT6BQ92526 530 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 OSMRQ99650 979 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 MRPL45Q9BRJ2 306 aaKnown RBP17.75■□□□□ 0.43
USP28-208ENST00000540438 FZD8Q9H461 694 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 HOMER3Q9NSC5 361 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 BAIAP2L1Q9UHR4 511 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 TSPAN16Q9UKR8 245 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 TPX2Q9ULW0 747 aaKnown RBP17.75■□□□□ 0.43
USP28-208ENST00000540438 CCT8L1PA6NM43 557 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 TGFB3P10600 412 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 RPL22P35268 128 aaKnown RBP17.75■□□□□ 0.43
USP28-208ENST00000540438 VCPP55072 806 aaKnown RBP17.75■□□□□ 0.43
USP28-208ENST00000540438 KCNJ2P63252 427 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 CTU1Q7Z7A3 348 aaKnown RBP17.75■□□□□ 0.43
USP28-208ENST00000540438 RXFP2Q8WXD0 754 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 PRCCQ92733 491 aaPredicted RBP17.75■□□□□ 0.43
USP28-208ENST00000540438 RBM41Q96IZ5 413 aaKnown RBP17.75■□□□□ 0.43
USP28-208ENST00000540438 TUBGCP4Q9UGJ1 667 aa17.75■□□□□ 0.43
USP28-208ENST00000540438 H7C0C1 242 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 RBP3P10745 1247 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 CA4P22748 312 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 KDELR1P24390 212 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 ATP5OP48047 213 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 ERFP50548 548 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 PPP1R26Q5T8A7 1209 aaPredicted RBP17.74■□□□□ 0.43
USP28-208ENST00000540438 C3orf20Q8ND61 904 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 ZMAT2Q96NC0 199 aaKnown RBP17.74■□□□□ 0.43
USP28-208ENST00000540438 ERAP1Q9NZ08 941 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 MFHAS1Q9Y4C4 1052 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 EIF3EP60228 445 aaKnown RBP17.74■□□□□ 0.43
USP28-208ENST00000540438 SLC25A11Q02978 314 aaKnown RBP17.74■□□□□ 0.43
USP28-208ENST00000540438 ARHGAP1Q07960 439 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 MYO1EQ12965 1108 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 SLC1A5Q15758 541 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 CDCA2Q69YH5 1023 aaPredicted RBP17.74■□□□□ 0.43
USP28-208ENST00000540438 DARS2Q6PI48 645 aaKnown RBP17.74■□□□□ 0.43
USP28-208ENST00000540438 C3orf62Q6ZUJ4 267 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 DPP9Q86TI2 863 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 TMEM176AQ96HP8 235 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 MAK16Q9BXY0 300 aaKnown RBP17.74■□□□□ 0.43
USP28-208ENST00000540438 USP18Q9UMW8 372 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 CNTN6Q9UQ52 1028 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 YARSP54577 528 aaKnown RBP17.74■□□□□ 0.43
USP28-208ENST00000540438 GPX6P59796 221 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 PMF1Q6P1K2 205 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 FAM183BPQ6ZVS7 135 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 CCDC63Q8NA47 563 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 FBXO36Q8NEA4 188 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 SLC10A4Q96EP9 437 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 WDR83Q9BRX9 315 aaKnown RBP17.74■□□□□ 0.43
USP28-208ENST00000540438 NKIRAS1Q9NYS0 192 aa17.74■□□□□ 0.43
USP28-208ENST00000540438 TRIP11Q15643 1979 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 C2orf71A6NGG8 1288 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 H3BRB1 525 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 PAEPP09466 180 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 FGFR1P11362 822 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 PPP1R15BQ5SWA1 713 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 BSPRYQ5W0U4 402 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 OR6B3Q8NGW1 331 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 PYROXD1Q8WU10 500 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 MAIP1Q8WWC4 291 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 CFAP36Q96G28 342 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 FAM167AQ96KS9 214 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 TRABDQ9H4I3 376 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 TUT1Q9H6E5 874 aaKnown RBP17.73■□□□□ 0.43
USP28-208ENST00000540438 KLC4Q9NSK0 619 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 GJD2Q9UKL4 321 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 NME7Q9Y5B8 376 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 E2F8A0AVK6 867 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 C3orf70A6NLC5 250 aaPredicted RBP17.73■□□□□ 0.43
USP28-208ENST00000540438 HBP1O60381 514 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 LCP1P13796 627 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 KRT4P19013 534 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 NUMBP49757 651 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 YWHAEP62258 255 aaKnown RBP17.73■□□□□ 0.43
USP28-208ENST00000540438 TMEM132DQ14C87 1099 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 OASLQ15646 514 aaKnown RBP17.73■□□□□ 0.43
USP28-208ENST00000540438 CGB2Q6NT52 195 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 ANKS4BQ8N8V4 417 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 CPT1BQ92523 772 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 SERPINB12Q96P63 405 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 DPP3Q9NY33 737 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 DCTN4Q9UJW0 460 aa17.73■□□□□ 0.43
USP28-208ENST00000540438 EIF4E1BA6NMX2 242 aaKnown RBP17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms