RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 EML3Q32P44 896 aa12.86□□□□□ -0.35
CBX3P4-202ENST00000540428 CCDC65Q8IXS2 484 aa12.86□□□□□ -0.35
CBX3P4-202ENST00000540428 SPATA17Q96L03 361 aa12.86□□□□□ -0.35
CBX3P4-202ENST00000540428 SLC22A12Q96S37 553 aa12.86□□□□□ -0.35
CBX3P4-202ENST00000540428 EHD2Q9NZN4 543 aa12.86□□□□□ -0.35
CBX3P4-202ENST00000540428 ARHGAP26Q9UNA1 814 aa12.86□□□□□ -0.35
CBX3P4-202ENST00000540428 ZNF233A6NK53 670 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 TULP1O00294 542 aaPredicted RBP12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 PRPF6O94906 941 aaKnown RBP12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 APBB3O95704 486 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 SYT1P21579 422 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 MPLP40238 635 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 SLC39A14Q15043 492 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 SF3A2Q15428 464 aaKnown RBP12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 CCDC142Q17RM4 750 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 DUOXA2Q1HG44 320 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 PLK5Q496M5 336 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 SCARA3Q6AZY7 606 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 C11orf74Q86VG3 221 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 SCN4BQ8IWT1 228 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 RPLP0P6Q8NHW5 317 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 SH3RF2Q8TEC5 729 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 KBTBD7Q8WVZ9 684 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 EZH1Q92800 747 aaPredicted RBP12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 HPDLQ96IR7 371 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 HHIPQ96QV1 700 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 CYP2S1Q96SQ9 504 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 SYT15Q9BQS2 421 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 FGFBP2Q9BYJ0 223 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 LRRC27Q9C0I9 530 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 PCIF1Q9H4Z3 704 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 KIAA1586Q9HCI6 787 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 VPS45Q9NRW7 570 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 MAGEC2Q9UBF1 373 aaPredicted RBP12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 WNT6Q9Y6F9 365 aa12.85□□□□□ -0.35
CBX3P4-202ENST00000540428 ACACBO00763 2458 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 TCHHQ07283 1943 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 A0A087X0B3 334 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 HCRTO43612 131 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 RHOBTB1O94844 696 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 NFATC1O95644 943 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 TNNC2P02585 160 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 FAM163BP0C2L3 166 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 HDCP19113 662 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 WARSP23381 471 aaKnown RBP12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 PPP3CCP48454 512 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 DMC1Q14565 340 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 ELF2Q15723 593 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 NAIF1Q69YI7 327 aaPredicted RBP12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 FAM173BQ6P4H8 233 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 DENND5BQ6ZUT9 1274 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 WDR49Q8IV35 697 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 ARL14EPQ8N8R7 260 aaPredicted RBP12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 OR5B17Q8NGF7 314 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 NOC3LQ8WTT2 800 aaKnown RBP12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 MYLPFQ96A32 169 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 FAM84AQ96KN4 292 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 TTLL2Q9BWV7 592 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 DUSP15Q9H1R2 295 aaPredicted RBP12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 TNMDQ9H2S6 317 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 CUEDC2Q9H467 287 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 ZSCAN16Q9H4T2 348 aaPredicted RBP12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 CRTAC1Q9NQ79 661 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 CACNA1BQ00975 2339 aa12.84□□□□□ -0.35
CBX3P4-202ENST00000540428 EPG5Q9HCE0 2579 aa12.83□□□□□ -0.35
CBX3P4-202ENST00000540428 C2orf78A6NCI8 922 aa12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 TRIM66O15016 1216 aa12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 EIF3DO15371 548 aaKnown RBP eCLIP12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 ATP2C2O75185 946 aa12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 BDNFP23560 247 aa12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 LMO2P25791 158 aa12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 ANXA13P27216 316 aa12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 PMLP29590 882 aa12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 GRIK1P39086 918 aa12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 PSMC1P62191 440 aaKnown RBP12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 NOP14P78316 857 aaKnown RBP12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 CEBPZQ03701 1054 aaKnown RBP12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 CCDC6Q16204 474 aa12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 STPG1Q5TH74 334 aa12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 LMBRD2Q68DH5 695 aaPredicted RBP12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 CBWD2Q8IUF1 395 aa12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 MYCBPAPQ8TBZ2 947 aa12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 INTS4Q96HW7 963 aaKnown RBP12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 C8orf48Q96LL4 319 aa12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 USP28Q96RU2 1077 aa12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 PANK2Q9BZ23 570 aa12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 RXFP3Q9NSD7 469 aa12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 POLR3BQ9NW08 1133 aaPredicted RBP12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 HSPBP1Q9NZL4 362 aa12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 TRPM5Q9NZQ8 1165 aa12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 DENND4CQ5VZ89 1909 aa12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 PTPRJQ12913 1337 aa12.83□□□□□ -0.36
CBX3P4-202ENST00000540428 TACC1O75410 805 aa12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 KRT37O76014 449 aa12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 OLFM2O95897 454 aa12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 NASPP49321 788 aaPredicted RBP12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 SNRPFP62306 86 aaKnown RBP12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 SLC7A9P82251 487 aa12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 SHC2P98077 582 aa12.82□□□□□ -0.36
CBX3P4-202ENST00000540428 CYP27A1Q02318 531 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms