RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 RNF40O75150 1001 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 ATF7P17544 494 aaPredicted RBP10.17□□□□□ -0.78
CLIP1-212ENST00000540304 AKAP5P24588 427 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 PSMC1P62191 440 aaKnown RBP10.17□□□□□ -0.78
CLIP1-212ENST00000540304 OGDHQ02218 1023 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 CRYMQ14894 314 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 CFAP58Q5T655 872 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 RBM12BQ8IXT5 1001 aaKnown RBP10.17□□□□□ -0.78
CLIP1-212ENST00000540304 CCDC105Q8IYK2 499 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 C18orf25Q96B23 403 aaPredicted RBP10.17□□□□□ -0.78
CLIP1-212ENST00000540304 CPXM1Q96SM3 734 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 SPC25Q9HBM1 224 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 SNX9Q9Y5X1 595 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 TMEM88BA6NKF7 163 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 GOLGA8SH3BPF8 625 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 M0QZ92 97 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 PPEF2O14830 753 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 XPOTO43592 962 aaKnown RBP10.16□□□□□ -0.78
CLIP1-212ENST00000540304 CD4P01730 458 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 NAT2P11245 290 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 KRT3P12035 628 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 KCNE1P15382 129 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 GBP1P32455 592 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 GJC1P36383 396 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 CETN2P41208 172 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 GPD2P43304 727 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 FLT3LGP49771 235 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 MRPS6P82932 125 aaKnown RBP10.16□□□□□ -0.78
CLIP1-212ENST00000540304 PDCLQ13371 301 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 ZNF268Q14587 947 aaPredicted RBP10.16□□□□□ -0.78
CLIP1-212ENST00000540304 STILQ15468 1287 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 XKR4Q5GH76 650 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 C9orf57Q5W0N0 161 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 LCLAT1Q6UWP7 414 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 XYLT1Q86Y38 959 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 IQCKQ8N0W5 287 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 FNIP1Q8TF40 1166 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 SLCO2A1Q92959 643 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 ZIM3Q96PE6 472 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 SH3GL2Q99962 352 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 GTF2IRD1Q9UHL9 959 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 SMIM28A0A1B0GU29 152 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 F8VP50 259 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 SEPT4O43236 478 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 PGK1P00558 417 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 ERBB2P04626 1255 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 RARBP10826 455 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 RALAP11233 206 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 PEX19P40855 299 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 GABRB2P47870 512 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 NKX3-2P78367 333 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 KLF1Q13351 362 aaPredicted RBP10.16□□□□□ -0.78
CLIP1-212ENST00000540304 CXCL17Q6UXB2 119 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 DPH6Q7L8W6 267 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 FAM228AQ86W67 206 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 RCOR2Q8IZ40 523 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 C1orf54Q8WWF1 131 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 RBM41Q96IZ5 413 aaKnown RBP10.16□□□□□ -0.78
CLIP1-212ENST00000540304 MRPL45Q9BRJ2 306 aaKnown RBP10.16□□□□□ -0.78
CLIP1-212ENST00000540304 HERPUD2Q9BSE4 406 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 OSBPL8Q9BZF1 889 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 HOMER3Q9NSC5 361 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 TJP2Q9UDY2 1190 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 PARP2Q9UGN5 583 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 IPPQ9Y573 584 aa10.16□□□□□ -0.78
CLIP1-212ENST00000540304 GOLGA8KD6RF30 607 aa10.15□□□□□ -0.78
CLIP1-212ENST00000540304 PIRO00625 290 aa10.15□□□□□ -0.78
CLIP1-212ENST00000540304 RFC1P35251 1148 aaPredicted RBP10.15□□□□□ -0.78
CLIP1-212ENST00000540304 PRKCZQ05513 592 aa10.15□□□□□ -0.78
CLIP1-212ENST00000540304 FBXW10Q5XX13 1052 aa10.15□□□□□ -0.78
CLIP1-212ENST00000540304 RSPH3Q86UC2 560 aa10.15□□□□□ -0.78
CLIP1-212ENST00000540304 SMC1BQ8NDV3 1235 aa10.15□□□□□ -0.78
CLIP1-212ENST00000540304 ZNF560Q96MR9 790 aa10.15□□□□□ -0.78
CLIP1-212ENST00000540304 FMO2Q99518 471 aa10.15□□□□□ -0.78
CLIP1-212ENST00000540304 ZDHHC18Q9NUE0 388 aa10.15□□□□□ -0.78
CLIP1-212ENST00000540304 KLK14Q9P0G3 267 aa10.15□□□□□ -0.78
CLIP1-212ENST00000540304 ADAM21Q9UKJ8 722 aa10.15□□□□□ -0.78
CLIP1-212ENST00000540304 TSPAN16Q9UKR8 245 aa10.15□□□□□ -0.78
CLIP1-212ENST00000540304 SNX24Q9Y343 169 aa10.15□□□□□ -0.78
CLIP1-212ENST00000540304 TRPV2Q9Y5S1 764 aa10.15□□□□□ -0.78
CLIP1-212ENST00000540304 KRT1P04264 644 aa10.15□□□□□ -0.79
CLIP1-212ENST00000540304 TCF4P15884 667 aa10.15□□□□□ -0.79
CLIP1-212ENST00000540304 CYP3A5P20815 502 aa10.15□□□□□ -0.79
CLIP1-212ENST00000540304 PSMA2P25787 234 aa10.15□□□□□ -0.79
CLIP1-212ENST00000540304 PNPLA4P41247 253 aa10.15□□□□□ -0.79
CLIP1-212ENST00000540304 KCNJ1P48048 391 aa10.15□□□□□ -0.79
CLIP1-212ENST00000540304 IFT88Q13099 833 aa10.15□□□□□ -0.79
CLIP1-212ENST00000540304 MTMR3Q13615 1198 aa10.15□□□□□ -0.79
CLIP1-212ENST00000540304 PUS10Q3MIT2 529 aaKnown RBP10.15□□□□□ -0.79
CLIP1-212ENST00000540304 FBXO47Q5MNV8 452 aa10.15□□□□□ -0.79
CLIP1-212ENST00000540304 ZFYVE27Q5T4F4 411 aa10.15□□□□□ -0.79
CLIP1-212ENST00000540304 TWF2Q6IBS0 349 aaKnown RBP10.15□□□□□ -0.79
CLIP1-212ENST00000540304 CYP4F22Q6NT55 531 aa10.15□□□□□ -0.79
CLIP1-212ENST00000540304 TMC3Q7Z5M5 1100 aa10.15□□□□□ -0.79
CLIP1-212ENST00000540304 UNC93AQ86WB7 457 aa10.15□□□□□ -0.79
CLIP1-212ENST00000540304 SMG8Q8ND04 991 aaKnown RBP10.15□□□□□ -0.79
CLIP1-212ENST00000540304 JOSD2Q8TAC2 188 aa10.15□□□□□ -0.79
CLIP1-212ENST00000540304 UBA3Q8TBC4 463 aa10.15□□□□□ -0.79
CLIP1-212ENST00000540304 GRK7Q8WTQ7 553 aa10.15□□□□□ -0.79
CLIP1-212ENST00000540304 MCRS1Q96EZ8 462 aa10.15□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms