RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 TMC8Q8IU68 726 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 CMASQ8NFW8 434 aaPredicted RBP13.8□□□□□ -0.2
CCDC42-202ENST00000539522 SPPL2BQ8TCT7 592 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 C2orf15Q8WU43 125 aaKnown RBP13.8□□□□□ -0.2
CCDC42-202ENST00000539522 DDX1Q92499 740 aaKnown RBP13.8□□□□□ -0.2
CCDC42-202ENST00000539522 SUSD6Q92537 303 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 CYFIP2Q96F07 1278 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 FUBP3Q96I24 572 aaKnown RBP eCLIP13.8□□□□□ -0.2
CCDC42-202ENST00000539522 STK33Q9BYT3 514 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 CSNK1G1Q9HCP0 422 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 ABCB6Q9NP58 842 aa13.8□□□□□ -0.2
CCDC42-202ENST00000539522 MYO16Q9Y6X6 1858 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 CCDC195A0A1B0GUA6 201 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 TNFRSF10BO14763 440 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 MOSPD3O75425 235 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 PAEPP09466 180 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 HMGA1P17096 107 aaKnown RBP13.79□□□□□ -0.2
CCDC42-202ENST00000539522 KCNA5P22460 613 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 ADORA2BP29275 332 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 HOXA9P31269 272 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 CCR2P41597 374 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 MAGEA11P43364 429 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 GSDMDP57764 484 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 USP46P62068 366 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 NFE2Q16621 373 aaPredicted RBP13.79□□□□□ -0.2
CCDC42-202ENST00000539522 CLEC20AQ6ZU45 233 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 GPRIN1Q7Z2K8 1008 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 CCDC186Q7Z3E2 898 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 GPR149Q86SP6 731 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 SPATA2LQ8IUW3 424 aaPredicted RBP13.79□□□□□ -0.2
CCDC42-202ENST00000539522 HS6ST3Q8IZP7 471 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 PPP2R3CQ969Q6 453 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 TNIP3Q96KP6 325 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 HEXIM2Q96MH2 286 aaKnown RBP13.79□□□□□ -0.2
CCDC42-202ENST00000539522 SEPT5Q99719 369 aaPredicted RBP13.79□□□□□ -0.2
CCDC42-202ENST00000539522 PRKD2Q9BZL6 878 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 SFXN1Q9H9B4 322 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 ZNF334Q9HCZ1 680 aaPredicted RBP13.79□□□□□ -0.2
CCDC42-202ENST00000539522 DZANK1Q9NVP4 752 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 ZDHHC7Q9NXF8 308 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 DNMT3BQ9UBC3 853 aaKnown RBP13.79□□□□□ -0.2
CCDC42-202ENST00000539522 CYTH4Q9UIA0 394 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 MAFFQ9ULX9 164 aa13.79□□□□□ -0.2
CCDC42-202ENST00000539522 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.79□□□□□ -0.2
CCDC42-202ENST00000539522 F8VP50 259 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 PRRG1O14668 218 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 MBTPS2O43462 519 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 NCK2O43639 380 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 GYPCP04921 128 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 POU2F2P09086 479 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 VDRP11473 427 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 CHRNB2P17787 502 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 PGFP49763 221 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 SMARCB1Q12824 385 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 RAPGEF1Q13905 1077 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 SLC5A9Q2M3M2 681 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 MGAT5BQ3V5L5 792 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 TMEM150AQ86TG1 271 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 NOP9Q86U38 636 aaKnown RBP13.78□□□□□ -0.2
CCDC42-202ENST00000539522 TTC39CQ8N584 583 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 WDTC1Q8N5D0 677 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 NEK11Q8NG66 645 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 GIPC2Q8TF65 315 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 HLA-CQ95604 372 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 SYT11Q9BT88 431 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 NUP58Q9BVL2 599 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 ADAM7Q9H2U9 754 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 IL21Q9HBE4 155 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 KRT82Q9NSB4 513 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 NOCTQ9UK39 431 aaKnown RBP13.78□□□□□ -0.2
CCDC42-202ENST00000539522 TSPAN16Q9UKR8 245 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.78□□□□□ -0.2
CCDC42-202ENST00000539522 DOCK8Q8NF50 2099 aa13.78□□□□□ -0.2
CCDC42-202ENST00000539522 TADA3O75528 432 aa13.77□□□□□ -0.21
CCDC42-202ENST00000539522 HNRNPA1P09651 372 aaKnown RBP eCLIP13.77□□□□□ -0.21
CCDC42-202ENST00000539522 KRT5P13647 590 aa13.77□□□□□ -0.21
CCDC42-202ENST00000539522 HOXB8P17481 243 aaPredicted RBP13.77□□□□□ -0.21
CCDC42-202ENST00000539522 RFX1P22670 979 aa13.77□□□□□ -0.21
CCDC42-202ENST00000539522 KCNQ1P51787 676 aa13.77□□□□□ -0.21
CCDC42-202ENST00000539522 EPHA5P54756 1037 aa13.77□□□□□ -0.21
CCDC42-202ENST00000539522 YWHAEP62258 255 aaKnown RBP13.77□□□□□ -0.21
CCDC42-202ENST00000539522 TBX2Q13207 712 aaPredicted RBP13.77□□□□□ -0.21
CCDC42-202ENST00000539522 SKIV2LQ15477 1246 aaKnown RBP13.77□□□□□ -0.21
CCDC42-202ENST00000539522 MAPRE1Q15691 268 aaKnown RBP13.77□□□□□ -0.21
CCDC42-202ENST00000539522 GOLGA7BQ2TAP0 167 aa13.77□□□□□ -0.21
CCDC42-202ENST00000539522 LEXMQ3ZCV2 418 aa13.77□□□□□ -0.21
CCDC42-202ENST00000539522 FIGNQ5HY92 759 aa13.77□□□□□ -0.21
CCDC42-202ENST00000539522 PRSS36Q5K4E3 855 aa13.77□□□□□ -0.21
CCDC42-202ENST00000539522 PPM1LQ5SGD2 360 aa13.77□□□□□ -0.21
CCDC42-202ENST00000539522 DENND1BQ6P3S1 775 aa13.77□□□□□ -0.21
CCDC42-202ENST00000539522 LCLAT1Q6UWP7 414 aa13.77□□□□□ -0.21
CCDC42-202ENST00000539522 ITIH6Q6UXX5 1313 aa13.77□□□□□ -0.21
CCDC42-202ENST00000539522 C4orf50Q6ZRC1 276 aa13.77□□□□□ -0.21
CCDC42-202ENST00000539522 EP400NLQ6ZTU2 488 aa13.77□□□□□ -0.21
CCDC42-202ENST00000539522 CCDC149Q6ZUS6 474 aa13.77□□□□□ -0.21
CCDC42-202ENST00000539522 IRF2BP2Q7Z5L9 587 aa13.77□□□□□ -0.21
CCDC42-202ENST00000539522 SLC20A1Q8WUM9 679 aa13.77□□□□□ -0.21
CCDC42-202ENST00000539522 ZNF606Q8WXB4 792 aa13.77□□□□□ -0.21
CCDC42-202ENST00000539522 IQCDQ96DY2 449 aa13.77□□□□□ -0.21
CCDC42-202ENST00000539522 C8orf48Q96LL4 319 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms