RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 USP46P62068 366 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 ASIC1P78348 528 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 PDGFRLQ15198 375 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 ZNF77Q15935 545 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 FAM26FQ5R3K3 315 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 CNNM4Q6P4Q7 775 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 STXBP4Q6ZWJ1 553 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 CEP68Q76N32 757 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 TRAPPC11Q7Z392 1133 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.05□□□□□ -0.96
USP28-203ENST00000537490 WDR49Q8IV35 697 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 NELFCDQ8IXH7 590 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 FAM160A2Q8N612 972 aaPredicted RBP9.05□□□□□ -0.96
USP28-203ENST00000537490 ARL14EPQ8N8R7 260 aaPredicted RBP9.05□□□□□ -0.96
USP28-203ENST00000537490 TTC16Q8NEE8 873 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 OSCP1Q8WVF1 389 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 ZNF516Q92618 1163 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 EZH1Q92800 747 aaPredicted RBP9.05□□□□□ -0.96
USP28-203ENST00000537490 ZNF396Q96N95 335 aaPredicted RBP9.05□□□□□ -0.96
USP28-203ENST00000537490 C7orf25Q9BPX7 421 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 MRPL45Q9BRJ2 306 aaKnown RBP9.05□□□□□ -0.96
USP28-203ENST00000537490 RTKNQ9BST9 563 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 LINC00597Q9H2U6 94 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 CUEDC2Q9H467 287 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 ECT2Q9H8V3 914 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 KIAA1586Q9HCI6 787 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 AGPAT3Q9NRZ7 376 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 SEMA4GQ9NTN9 838 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 DUS2Q9NX74 493 aaKnown RBP9.05□□□□□ -0.96
USP28-203ENST00000537490 CDH9Q9ULB4 789 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 R3HCC1Q9Y3T6 440 aaKnown RBP9.05□□□□□ -0.96
USP28-203ENST00000537490 WNT6Q9Y6F9 365 aa9.05□□□□□ -0.96
USP28-203ENST00000537490 NUP210Q8TEM1 1887 aaPredicted RBP9.04□□□□□ -0.96
USP28-203ENST00000537490 NCOR2Q9Y618 2525 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.04□□□□□ -0.96
USP28-203ENST00000537490 AXIN1O15169 862 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 GDF9O60383 454 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 CUTAO60888 179 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 LRP3O75074 770 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 ATG13O75143 517 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 YEATS4O95619 227 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 CKMP06732 381 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 DLATP10515 647 aaKnown RBP9.04□□□□□ -0.96
USP28-203ENST00000537490 HDCP19113 662 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 TNNI1P19237 187 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 GNL1P36915 607 aaPredicted RBP9.04□□□□□ -0.96
USP28-203ENST00000537490 GRIK1P39086 918 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 IFNAR2P48551 515 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 CYP2J2P51589 502 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 ZXDBP98169 803 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 AMPD3Q01432 767 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 AMPD2Q01433 879 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 CYP27A1Q02318 531 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 EHHADHQ08426 723 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 USP4Q13107 963 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 PSMD6Q15008 389 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 CSRP2Q16527 193 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 SNRNP35Q16560 246 aaKnown RBP9.04□□□□□ -0.96
USP28-203ENST00000537490 EML3Q32P44 896 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 FOXD4L6Q3SYB3 417 aaPredicted RBP9.04□□□□□ -0.96
USP28-203ENST00000537490 VSTM1Q6UX27 236 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 FOXD4L3Q6VB84 417 aaPredicted RBP9.04□□□□□ -0.96
USP28-203ENST00000537490 C4orf50Q6ZRC1 276 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 PRR23CQ6ZRP0 262 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 UNC13DQ70J99 1090 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 CPA6Q8N4T0 437 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 IQUBQ8NA54 791 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 SH3RF2Q8TEC5 729 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 SCFD1Q8WVM8 642 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 CCDC127Q96BQ5 260 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 PCED1BQ96HM7 432 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 SPATA17Q96L03 361 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 MMS19Q96T76 1030 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 CGRRF1Q99675 332 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 P2RY13Q9BPV8 354 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 GZF1Q9H116 711 aaPredicted RBP9.04□□□□□ -0.96
USP28-203ENST00000537490 BLZF1Q9H2G9 400 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 SLC8A2Q9UPR5 921 aa9.04□□□□□ -0.96
USP28-203ENST00000537490 DCHS1Q96JQ0 3298 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.03□□□□□ -0.96
USP28-203ENST00000537490 CCDC163A0A0D9SF12 145 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 ANTXRLA6NF34 631 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 SLC30A4O14863 429 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 POLR2DO15514 142 aaKnown RBP9.03□□□□□ -0.96
USP28-203ENST00000537490 TACC1O75410 805 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 RPP40O75818 363 aaKnown RBP9.03□□□□□ -0.96
USP28-203ENST00000537490 TCF3P15923 654 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 DRD1P21728 446 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 CACNA2D1P54289 1103 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 CYP24A1Q07973 514 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 KCNB1Q14721 858 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 MAPRE1Q15691 268 aaKnown RBP9.03□□□□□ -0.96
USP28-203ENST00000537490 CCDC6Q16204 474 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 MDH1BQ5I0G3 518 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 DENND5BQ6ZUT9 1274 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 KBTBD6Q86V97 674 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 FSIP1Q8NA03 581 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 XXYLT1Q8NBI6 393 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 OR6B3Q8NGW1 331 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 MYCBPAPQ8TBZ2 947 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms