RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 PPIL6Q8IXY8 311 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 ST13P5Q8NFI4 369 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-209ENST00000537178 USP13Q92995 863 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-209ENST00000537178 PAPOLBQ9NRJ5 636 aaKnown RBP11.05□□□□□ -0.64
CLIP1-209ENST00000537178 KRT84Q9NSB2 600 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 PARP4Q9UKK3 1724 aaKnown RBP11.05□□□□□ -0.64
CLIP1-209ENST00000537178 RSPH10B2B2RC85 870 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 FOXN1O15353 648 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 P4HA2O15460 535 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 RHOBTB3O94955 611 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 RSPH10BP0C881 870 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 SOX11P35716 441 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 KPNB1Q14974 876 aaKnown RBP11.05□□□□□ -0.64
CLIP1-209ENST00000537178 BOLA3Q53S33 107 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 ZRANB3Q5FWF4 1079 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 ERAP2Q6P179 960 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 DENND1BQ6P3S1 775 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 ARID3BQ8IVW6 561 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-209ENST00000537178 SLC25A41Q8N5S1 370 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 KLF6Q99612 283 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-209ENST00000537178 MKNK1Q9BUB5 465 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 PARVBQ9HBI1 364 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 KRCC1Q9NPI7 259 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-209ENST00000537178 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.05□□□□□ -0.64
CLIP1-209ENST00000537178 DCDC2Q9UHG0 476 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 FBXO2Q9UK22 296 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-209ENST00000537178 TMCC3Q9ULS5 477 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 SPACA6W5XKT8 324 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 COL22A1Q8NFW1 1626 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-209ENST00000537178 PRRG1O14668 218 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 DLGAP3O95886 979 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 UBTFL6P0CB48 400 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-209ENST00000537178 SOX6P35712 828 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 RFC5P40937 340 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 GUCA1AP43080 201 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-209ENST00000537178 CHRNB3Q05901 458 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 COG2Q14746 738 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 CHI3L2Q15782 390 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 GLB1LQ6UWU2 654 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 METTL16Q86W50 562 aaKnown RBP11.05□□□□□ -0.64
CLIP1-209ENST00000537178 CHSY1Q86X52 802 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 CCDC126Q96EE4 140 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 SLITRK1Q96PX8 696 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 SIKE1Q9BRV8 207 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 RPAP3Q9H6T3 665 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-209ENST00000537178 WWOXQ9NZC7 414 aa11.05□□□□□ -0.64
CLIP1-209ENST00000537178 DGKIO75912 1065 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 CYP2C8P10632 490 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 GPD1P21695 349 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 MZF1P28698 734 aaPredicted RBP11.04□□□□□ -0.64
CLIP1-209ENST00000537178 STIP1P31948 543 aaKnown RBP11.04□□□□□ -0.64
CLIP1-209ENST00000537178 PWP1Q13610 501 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 HLFQ16534 295 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 TKFCQ3LXA3 575 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 SV2CQ496J9 727 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 AGAP9Q5VTM2 703 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 KCTD17Q8N5Z5 321 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 DNAJC7Q99615 494 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 HPS4Q9NQG7 708 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 PNPLA7Q6ZV29 1317 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 PXDNQ92626 1479 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 POLRMTO00411 1230 aaKnown RBP11.04□□□□□ -0.64
CLIP1-209ENST00000537178 PDGFRBP09619 1106 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 AKR1B1P15121 316 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 COMTP21964 271 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 ITGA8P53708 1063 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 FAM182BQ5T319 152 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 SDE2Q6IQ49 451 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 MRNIPQ6NTE8 343 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 CCNJLQ8IV13 435 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 ZNF786Q8N393 782 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 MRPL48Q96GC5 212 aaKnown RBP11.04□□□□□ -0.64
CLIP1-209ENST00000537178 IRX2Q9BZI1 471 aaPredicted RBP11.04□□□□□ -0.64
CLIP1-209ENST00000537178 ISCUQ9H1K1 167 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 RBM12Q9NTZ6 932 aaKnown RBP11.04□□□□□ -0.64
CLIP1-209ENST00000537178 MAGEA13PA6NCF6 341 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 ATP6V1B1P15313 513 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 RRM2P31350 389 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 EPHA10Q5JZY3 1008 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 FAM45BPQ6NSW5 357 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 KIF2BQ8N4N8 673 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 TRMT6Q9UJA5 497 aaKnown RBP11.04□□□□□ -0.64
CLIP1-209ENST00000537178 ALG6Q9Y672 507 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 AFDNP55196 1824 aaKnown RBP11.04□□□□□ -0.64
CLIP1-209ENST00000537178 TRIM49D1C9J1S8 452 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 IGF2BP3O00425 579 aaKnown RBP eCLIP11.04□□□□□ -0.64
CLIP1-209ENST00000537178 RAD51CO43502 376 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 TPST1O60507 370 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 IGKV5-2P06315 115 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 DARSP14868 501 aaKnown RBP11.04□□□□□ -0.64
CLIP1-209ENST00000537178 HARS2P49590 506 aaKnown RBP11.04□□□□□ -0.64
CLIP1-209ENST00000537178 GEMIN4P57678 1058 aaKnown RBP11.04□□□□□ -0.64
CLIP1-209ENST00000537178 NCF4Q15080 339 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 ZNF544Q6NX49 715 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 GPR141Q7Z602 305 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 ELOA2Q8IYF1 753 aaPredicted RBP11.04□□□□□ -0.64
CLIP1-209ENST00000537178 LPAR1Q92633 364 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 TMEM143Q96AN5 459 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 NIF3L1Q9GZT8 377 aa11.04□□□□□ -0.64
CLIP1-209ENST00000537178 EFCAB1Q9HAE3 211 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms