RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, human

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP48-215	ENST00000534705	PEX1	O43933	1283 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	UBXN7	O94888	489 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	AHSG	P02765	367 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	CENPB	P07199	599 aa	Predicted RBP	4.36	□□□□□ -1.71
USP48-215	ENST00000534705	FOLR3	P41439	243 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	NPTX2	P47972	431 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	RARRES1	P49788	294 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	HNRNPM	P52272	730 aa	Known RBP eCLIP	4.36	□□□□□ -1.71
USP48-215	ENST00000534705	SOX8	P57073	446 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	NXPH1	P58417	271 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	GPSM2	P81274	684 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	MRPS35	P82673	323 aa	Known RBP	4.36	□□□□□ -1.71
USP48-215	ENST00000534705	ITIH3	Q06033	890 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	FGL2	Q14314	439 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	ZNF169	Q14929	603 aa	Predicted RBP	4.36	□□□□□ -1.71
USP48-215	ENST00000534705	SF3B3	Q15393	1217 aa	Known RBP	4.36	□□□□□ -1.71
USP48-215	ENST00000534705	MINDY4	Q4G0A6	757 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	FAM160B1	Q5W0V3	765 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	GRASP	Q7Z6J2	395 aa	Predicted RBP	4.36	□□□□□ -1.71
USP48-215	ENST00000534705	DAAM2	Q86T65	1068 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	USP37	Q86T82	979 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	ARHGEF25	Q86VW2	580 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	PLBD2	Q8NHP8	589 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	PGBD1	Q96JS3	809 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	MRGPRX1	Q96LB2	322 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	ACO2	Q99798	780 aa	Known RBP	4.36	□□□□□ -1.71
USP48-215	ENST00000534705	HEPH	Q9BQS7	1158 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	TMEM60	Q9H2L4	133 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	C1orf112	Q9NSG2	853 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	AGAP1	Q9UPQ3	857 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	PLEKHM1	Q9Y4G2	1056 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	PAXBP1	Q9Y5B6	917 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	PCDHA1	Q9Y5I3	950 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	RTEL1-TNFRSF6B	F6WH68	1400 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	MIA2	Q96PC5	1412 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	A2M	P01023	1474 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	LMTK3	Q96Q04	1460 aa		4.36	□□□□□ -1.71
USP48-215	ENST00000534705	GCC2	Q8IWJ2	1684 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705		A0A0B4J269	797 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	CCDC151	A5D8V7	595 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	YY2	O15391	372 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	TSPAN6	O43657	245 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	TRIAP1	O43715	76 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	TUSC2	O75896	110 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	GATA3	P23771	443 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	NDUFV1	P49821	464 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	CACNA2D1	P54289	1103 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	EXOSC9	Q06265	439 aa	Known RBP	4.35	□□□□□ -1.71
USP48-215	ENST00000534705	SRSF4	Q08170	494 aa	Known RBP	4.35	□□□□□ -1.71
USP48-215	ENST00000534705	TUBB3	Q13509	450 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	PTPRR	Q15256	657 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	CD300E	Q496F6	205 aa	Predicted RBP	4.35	□□□□□ -1.71
USP48-215	ENST00000534705	ANO6	Q4KMQ2	910 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	KIAA1614	Q5VZ46	1190 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	TAF2	Q6P1X5	1199 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	OVCH2	Q7RTZ1	564 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	FAM109A	Q8N4B1	249 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	SH2D3C	Q8N5H7	860 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	ZBTB34	Q8NCN2	500 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	ACTRT2	Q8TDY3	377 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	KBTBD7	Q8WVZ9	684 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	PDLIM2	Q96JY6	352 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	ZNF778	Q96MU6	729 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	PCGF6	Q9BYE7	350 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	METTL14	Q9HCE5	456 aa	Known RBP	4.35	□□□□□ -1.71
USP48-215	ENST00000534705	FOXJ2	Q9P0K8	574 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	LRIT1	Q9P2V4	623 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	HESX1	Q9UBX0	185 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	CFDP1	Q9UEE9	299 aa	Predicted RBP	4.35	□□□□□ -1.71
USP48-215	ENST00000534705	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	4.35	□□□□□ -1.71
USP48-215	ENST00000534705	FGD6	Q6ZV73	1430 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	SHANK2	Q9UPX8	1470 aa		4.35	□□□□□ -1.71
USP48-215	ENST00000534705	WDR27	A2RRH5	827 aa		4.34	□□□□□ -1.71
USP48-215	ENST00000534705		M0QYG6	137 aa		4.34	□□□□□ -1.71
USP48-215	ENST00000534705	ORC4	O43929	436 aa		4.34	□□□□□ -1.71
USP48-215	ENST00000534705	DNAJB5	O75953	348 aa		4.34	□□□□□ -1.71
USP48-215	ENST00000534705	KIF20A	O95235	890 aa		4.34	□□□□□ -1.71
USP48-215	ENST00000534705	TH	P07101	528 aa		4.34	□□□□□ -1.71
USP48-215	ENST00000534705	ATXN1L	P0C7T5	689 aa	Known RBP	4.34	□□□□□ -1.71
USP48-215	ENST00000534705	ITGAL	P20701	1170 aa		4.34	□□□□□ -1.71
USP48-215	ENST00000534705	VIPR2	P41587	438 aa		4.34	□□□□□ -1.71
USP48-215	ENST00000534705	PHKA1	P46020	1223 aa		4.34	□□□□□ -1.71
USP48-215	ENST00000534705	TOB1	P50616	345 aa	Predicted RBP	4.34	□□□□□ -1.71
USP48-215	ENST00000534705	ARFIP2	P53365	341 aa		4.34	□□□□□ -1.71
USP48-215	ENST00000534705	KHDC1L	Q5JSQ8	128 aa		4.34	□□□□□ -1.71
USP48-215	ENST00000534705	B3GALNT2	Q8NCR0	500 aa		4.34	□□□□□ -1.71
USP48-215	ENST00000534705	NSUN7	Q8NE18	718 aa	Known RBP	4.34	□□□□□ -1.71
USP48-215	ENST00000534705	LPIN2	Q92539	896 aa		4.34	□□□□□ -1.71
USP48-215	ENST00000534705	LRGUK	Q96M69	825 aa		4.34	□□□□□ -1.71
USP48-215	ENST00000534705	MOGAT1	Q96PD6	335 aa		4.34	□□□□□ -1.71
USP48-215	ENST00000534705	NELL2	Q99435	816 aa		4.34	□□□□□ -1.71
USP48-215	ENST00000534705	POLR3GL	Q9BT43	218 aa		4.34	□□□□□ -1.71
USP48-215	ENST00000534705	ALG8	Q9BVK2	526 aa		4.34	□□□□□ -1.71
USP48-215	ENST00000534705	DPH1	Q9BZG8	443 aa		4.34	□□□□□ -1.71
USP48-215	ENST00000534705	PIH1D1	Q9NWS0	290 aa	Known RBP	4.34	□□□□□ -1.71
USP48-215	ENST00000534705	RAD54B	Q9Y620	910 aa		4.34	□□□□□ -1.71
USP48-215	ENST00000534705	PRDM15	P57071	1507 aa	Predicted RBP	4.34	□□□□□ -1.71
USP48-215	ENST00000534705	FAM135A	Q9P2D6	1515 aa		4.34	□□□□□ -1.71
USP48-215	ENST00000534705	VWDE	Q8N2E2	1590 aa		4.34	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms