RNA–Protein interactions for RNA: ENST00000533704.1

CAPN1-225, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 643 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-225ENST00000533704 DDX6P26196 483 aaKnown RBP eCLIP11.14□□□□□ -0.63
CAPN1-225ENST00000533704 ATICP31939 592 aa11.14□□□□□ -0.63
CAPN1-225ENST00000533704 MAGEA9P43362 315 aa11.14□□□□□ -0.63
CAPN1-225ENST00000533704 MAGEA11P43364 429 aa11.14□□□□□ -0.63
CAPN1-225ENST00000533704 AP3M2P53677 418 aa11.14□□□□□ -0.63
CAPN1-225ENST00000533704 CDH8P55286 799 aa11.14□□□□□ -0.63
CAPN1-225ENST00000533704 NUCB2P80303 420 aa11.14□□□□□ -0.63
CAPN1-225ENST00000533704 TNK2Q07912 1038 aa11.14□□□□□ -0.63
CAPN1-225ENST00000533704 FCHO2Q0JRZ9 810 aa11.14□□□□□ -0.63
CAPN1-225ENST00000533704 IFRD2Q12894 506 aaPredicted RBP11.14□□□□□ -0.63
CAPN1-225ENST00000533704 PNOCQ13519 176 aa11.14□□□□□ -0.63
CAPN1-225ENST00000533704 CC2D1AQ6P1N0 951 aaPredicted RBP11.14□□□□□ -0.63
CAPN1-225ENST00000533704 LIMS2Q7Z4I7 341 aa11.14□□□□□ -0.63
CAPN1-225ENST00000533704 MON1AQ86VX9 555 aa11.14□□□□□ -0.63
CAPN1-225ENST00000533704 SLC9A9Q8IVB4 645 aa11.14□□□□□ -0.63
CAPN1-225ENST00000533704 MYCBPAPQ8TBZ2 947 aa11.14□□□□□ -0.63
CAPN1-225ENST00000533704 PCED1BQ96HM7 432 aa11.14□□□□□ -0.63
CAPN1-225ENST00000533704 XYLT2Q9H1B5 865 aa11.14□□□□□ -0.63
CAPN1-225ENST00000533704 LMAN1LQ9HAT1 526 aa11.14□□□□□ -0.63
CAPN1-225ENST00000533704 TRPV5Q9NQA5 729 aa11.14□□□□□ -0.63
CAPN1-225ENST00000533704 GKN1Q9NS71 199 aa11.14□□□□□ -0.63
CAPN1-225ENST00000533704 OBP2AQ9NY56 170 aa11.14□□□□□ -0.63
CAPN1-225ENST00000533704 ZMYM5Q9UJ78 669 aa11.14□□□□□ -0.63
CAPN1-225ENST00000533704 CCL26Q9Y258 94 aa11.14□□□□□ -0.63
CAPN1-225ENST00000533704 TRAV19A0A0A6YYK7 116 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 SHISA7A6NL88 538 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 F8VP50 259 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 SPECC1L-ADORA2AF8WAN1 911 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 ARNTLO00327 626 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 CLDN5O00501 218 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 TADA3O75528 432 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 VNN1O95497 513 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 ABL1P00519 1130 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 C4BPAP04003 597 aaKnown RBP11.13□□□□□ -0.63
CAPN1-225ENST00000533704 CKMP06732 381 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 KRT13P13646 458 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 PIK3CAP42336 1068 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 PLCB2Q00722 1185 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 MTAPQ13126 283 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 ORC1Q13415 861 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 ZC3H14Q6PJT7 736 aaKnown RBP11.13□□□□□ -0.63
CAPN1-225ENST00000533704 TSSK4Q6SA08 328 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 VSTM1Q6UX27 236 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 SMYD4Q8IYR2 804 aaPredicted RBP11.13□□□□□ -0.63
CAPN1-225ENST00000533704 MAML2Q8IZL2 1156 aaPredicted RBP11.13□□□□□ -0.63
CAPN1-225ENST00000533704 B3GALNT2Q8NCR0 500 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 TMC2Q8TDI7 906 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 USP13Q92995 863 aaPredicted RBP11.13□□□□□ -0.63
CAPN1-225ENST00000533704 CLDN23Q96B33 292 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 TRMT2BQ96GJ1 504 aaKnown RBP11.13□□□□□ -0.63
CAPN1-225ENST00000533704 MED10Q9BTT4 135 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 ZNF518BQ9C0D4 1074 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 C8orf33Q9H7E9 229 aaPredicted RBP11.13□□□□□ -0.63
CAPN1-225ENST00000533704 TDP1Q9NUW8 608 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 SPTBN4Q9H254 2564 aa11.13□□□□□ -0.63
CAPN1-225ENST00000533704 ATP8B3O60423 1300 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 GVINP1Q7Z2Y8 2422 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 C2orf78A6NCI8 922 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 TRIM66O15016 1216 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 STAU1O95793 577 aaKnown RBP11.12□□□□□ -0.63
CAPN1-225ENST00000533704 HLA-DRAP01903 254 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 USP17L7P0C7H9 530 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 TRIM49P0CI25 452 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 TRIM49CP0CI26 452 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 P4HA1P13674 534 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 WEE1P30291 646 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 CTHP32929 405 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 RPS9P46781 194 aaKnown RBP11.12□□□□□ -0.63
CAPN1-225ENST00000533704 VAMP7P51809 220 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 USP46P62068 366 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 FZD5Q13467 585 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 KCNB1Q14721 858 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 PON2Q15165 354 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 ITPRIPL2Q3MIP1 535 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 TRIM68Q6AZZ1 485 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 SPOPLQ6IQ16 392 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 TXNDC11Q6PKC3 985 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 DENND5BQ6ZUT9 1274 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 FAM186BQ8IYM0 893 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 ADSSL1Q8N142 457 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 GUF1Q8N442 669 aaKnown RBP11.12□□□□□ -0.63
CAPN1-225ENST00000533704 ARL14EPQ8N8R7 260 aaPredicted RBP11.12□□□□□ -0.63
CAPN1-225ENST00000533704 EEF2KMTQ96G04 330 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 SPATA17Q96L03 361 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 MYRFLQ96LU7 910 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 SLC22A12Q96S37 553 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 CYP2S1Q96SQ9 504 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 HINFPQ9BQA5 517 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 B3GNT5Q9BYG0 378 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 ELOVL4Q9GZR5 314 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 SDCBP2Q9H190 292 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 CHRDQ9H2X0 955 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 EBF3Q9H4W6 596 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 KIF9Q9HAQ2 790 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 RBM12Q9NTZ6 932 aaKnown RBP11.12□□□□□ -0.63
CAPN1-225ENST00000533704 TRPM5Q9NZQ8 1165 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 TRAF3IP3Q9Y228 551 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 RALGAPA1Q6GYQ0 2036 aa11.12□□□□□ -0.63
CAPN1-225ENST00000533704 KINO60870 393 aaKnown RBP11.11□□□□□ -0.63
CAPN1-225ENST00000533704 AKAP3O75969 853 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms