RNA–Protein interactions for RNA: ENST00000531551.5

CTSB-222, Transcript of cathepsin B, human

TSL 1 (best)

Gene CTSB, Length 1,855 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSB-222	ENST00000531551	AFF4	Q9UHB7	1163 aa	Known RBP	18.69	■□□□□ 0.58
CTSB-222	ENST00000531551	AKR1B10	O60218	316 aa		18.69	■□□□□ 0.58
CTSB-222	ENST00000531551	SOAT2	O75908	522 aa		18.69	■□□□□ 0.58
CTSB-222	ENST00000531551	ABLIM3	O94929	683 aa		18.69	■□□□□ 0.58
CTSB-222	ENST00000531551	GLUD1	P00367	558 aa		18.69	■□□□□ 0.58
CTSB-222	ENST00000531551	ATF2	P15336	505 aa		18.69	■□□□□ 0.58
CTSB-222	ENST00000531551	CACNA2D1	P54289	1103 aa		18.69	■□□□□ 0.58
CTSB-222	ENST00000531551	CFAP221	Q4G0U5	840 aa		18.69	■□□□□ 0.58
CTSB-222	ENST00000531551	TTC9B	Q8N6N2	239 aa		18.69	■□□□□ 0.58
CTSB-222	ENST00000531551	C2orf15	Q8WU43	125 aa	Known RBP	18.69	■□□□□ 0.58
CTSB-222	ENST00000531551	SECISBP2L	Q93073	1101 aa	Known RBP	18.69	■□□□□ 0.58
CTSB-222	ENST00000531551	FUBP3	Q96I24	572 aa	Known RBP eCLIP	18.69	■□□□□ 0.58
CTSB-222	ENST00000531551	CRISPLD1	Q9H336	500 aa		18.69	■□□□□ 0.58
CTSB-222	ENST00000531551	PCDHGC3	Q9UN70	934 aa		18.69	■□□□□ 0.58
CTSB-222	ENST00000531551	SOWAHD	A6NJG2	315 aa		18.68	■□□□□ 0.58
CTSB-222	ENST00000531551	TMCO5B	A8MYB1	307 aa		18.68	■□□□□ 0.58
CTSB-222	ENST00000531551	PRRG1	O14668	218 aa		18.68	■□□□□ 0.58
CTSB-222	ENST00000531551	VNN2	O95498	520 aa		18.68	■□□□□ 0.58
CTSB-222	ENST00000531551	NPR3	P17342	541 aa		18.68	■□□□□ 0.58
CTSB-222	ENST00000531551	NRIP1	P48552	1158 aa		18.68	■□□□□ 0.58
CTSB-222	ENST00000531551	BCAT1	P54687	386 aa		18.68	■□□□□ 0.58
CTSB-222	ENST00000531551	PDE4C	Q08493	712 aa		18.68	■□□□□ 0.58
CTSB-222	ENST00000531551	TMTC1	Q8IUR5	882 aa		18.68	■□□□□ 0.58
CTSB-222	ENST00000531551	C1orf131	Q8NDD1	294 aa	Known RBP	18.68	■□□□□ 0.58
CTSB-222	ENST00000531551	KCNK16	Q96T55	309 aa		18.68	■□□□□ 0.58
CTSB-222	ENST00000531551	PCDHB18P	Q96TA0	734 aa		18.68	■□□□□ 0.58
CTSB-222	ENST00000531551	DUSP16	Q9BY84	665 aa		18.68	■□□□□ 0.58
CTSB-222	ENST00000531551	CLASP2	O75122	1294 aa	Known RBP	18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	BEST1	O76090	585 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	SEC24A	O95486	1093 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	IGFBP4	P22692	258 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	CDK17	Q00537	523 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	GFPT1	Q06210	699 aa	Predicted RBP	18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	BST2	Q10589	180 aa	Known RBP	18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	LLGL2	Q6P1M3	1020 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	CLEC20A	Q6ZU45	233 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	CPA5	Q8WXQ8	436 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	ZNF830	Q96NB3	372 aa	Predicted RBP	18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	SYT11	Q9BT88	431 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	IGFLR1	Q9H665	355 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	ST7	Q9NRC1	585 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	SSU72P8	A0A1W2PR75	194 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551		F8VP50	259 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	TULP2	O00295	520 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	DDX3X	O00571	662 aa	Known RBP eCLIP	18.67	■□□□□ 0.58	8e-12	■■■■■ 32.2
CTSB-222	ENST00000531551	NRDC	O43847	1150 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	GPR15	P49685	360 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	RGS7	P49802	495 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	CLCN4	P51793	760 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	MAPK8IP2	Q13387	824 aa	Predicted RBP	18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	DDR2	Q16832	855 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	SDHAF4	Q5VUM1	108 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	NAA35	Q5VZE5	725 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	TMEM35B	Q8NCS4	154 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	PPP2R3C	Q969Q6	453 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	SMO	Q99835	787 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	ABCB6	Q9NP58	842 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	DMAP1	Q9NPF5	467 aa	Predicted RBP	18.67	■□□□□ 0.58
CTSB-222	ENST00000531551	SPTLC3	Q9NUV7	552 aa		18.67	■□□□□ 0.58
CTSB-222	ENST00000531551		A0A087X0T9	212 aa		18.66	■□□□□ 0.58
CTSB-222	ENST00000531551	FAM228B	P0C875	321 aa		18.66	■□□□□ 0.58
CTSB-222	ENST00000531551	HAPLN1	P10915	354 aa	Predicted RBP	18.66	■□□□□ 0.58
CTSB-222	ENST00000531551	ANXA13	P27216	316 aa		18.66	■□□□□ 0.58
CTSB-222	ENST00000531551	GPD2	P43304	727 aa		18.66	■□□□□ 0.58
CTSB-222	ENST00000531551	KIF11	P52732	1056 aa		18.66	■□□□□ 0.58
CTSB-222	ENST00000531551	VSTM1	Q6UX27	236 aa		18.66	■□□□□ 0.58
CTSB-222	ENST00000531551	TRIM72	Q6ZMU5	477 aa		18.66	■□□□□ 0.58
CTSB-222	ENST00000531551	TMEM139	Q8IV31	216 aa		18.66	■□□□□ 0.58
CTSB-222	ENST00000531551	KREMEN2	Q8NCW0	462 aa		18.66	■□□□□ 0.58
CTSB-222	ENST00000531551	SLC30A5	Q8TAD4	765 aa		18.66	■□□□□ 0.58
CTSB-222	ENST00000531551	GPR152	Q8TDT2	470 aa		18.66	■□□□□ 0.58
CTSB-222	ENST00000531551	LHX5	Q9H2C1	402 aa		18.66	■□□□□ 0.58
CTSB-222	ENST00000531551	NSUN3	Q9H649	340 aa	Known RBP	18.66	■□□□□ 0.58
CTSB-222	ENST00000531551	TMEM30A	Q9NV96	361 aa		18.66	■□□□□ 0.58
CTSB-222	ENST00000531551	SZT2	Q5T011	3432 aa		18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	SPDYE4	A6NLX3	237 aa		18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	PIK3R2	O00459	728 aa		18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	SETSIP	P0DME0	302 aa		18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	EPCAM	P16422	314 aa		18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	TUFM	P49411	452 aa	Known RBP	18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	MTF1	Q14872	753 aa		18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	CLEC16A	Q2KHT3	1053 aa		18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	PKDCC	Q504Y2	493 aa		18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	HABP4	Q5JVS0	413 aa	Known RBP	18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	LIN9	Q5TKA1	542 aa		18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	LILRA6	Q6PI73	481 aa		18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	DNAAF5	Q86Y56	855 aa		18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	WDTC1	Q8N5D0	677 aa		18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	CCDC112	Q8NEF3	446 aa		18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	SLC7A14	Q8TBB6	771 aa		18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	HCFC2	Q9Y5Z7	792 aa		18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	TRIM66	O15016	1216 aa		18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	CYP1A1	P04798	512 aa	Predicted RBP	18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	FECH	P22830	423 aa		18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	GTF2F1	P35269	517 aa	Known RBP eCLIP	18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	CYLC1	P35663	651 aa	Predicted RBP	18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	MAGEA11	P43364	429 aa		18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	NOMO3	P69849	1222 aa		18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	IFRD2	Q12894	506 aa	Predicted RBP	18.65	■□□□□ 0.58
CTSB-222	ENST00000531551	TCEAL5	Q5H9L2	206 aa		18.65	■□□□□ 0.58

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