RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 STK4Q13043 487 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 PPP2R5CQ13362 524 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 MOGSQ13724 837 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 THOC5Q13769 683 aaKnown RBP6.08□□□□□ -1.44
CD44-225ENST00000527326 APOFQ13790 326 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 AUHQ13825 339 aaKnown RBP6.08□□□□□ -1.44
CD44-225ENST00000527326 COL9A3Q14050 684 aaPredicted RBP6.08□□□□□ -1.44
CD44-225ENST00000527326 PDE1CQ14123 709 aaPredicted RBP6.08□□□□□ -1.44
CD44-225ENST00000527326 DOC2BQ14184 412 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 RPS6KA1Q15418 735 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 TRADDQ15628 312 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 NFE2Q16621 373 aaPredicted RBP6.08□□□□□ -1.44
CD44-225ENST00000527326 KYNUQ16719 465 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 PROSER3Q2NL68 480 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 KLHL38Q2WGJ6 581 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 ANO4Q32M45 955 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 PRRT3Q5FWE3 981 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 EPHA10Q5JZY3 1008 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 FAM122CQ6P4D5 195 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 POTEAQ6S8J7 498 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 DSTYKQ6XUX3 929 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 KIF6Q6ZMV9 814 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 FAM47EQ6ZV65 393 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 CYP4V2Q6ZWL3 525 aaPredicted RBP6.08□□□□□ -1.44
CD44-225ENST00000527326 CAND1Q86VP6 1230 aaKnown RBP6.08□□□□□ -1.44
CD44-225ENST00000527326 LRRC6Q86X45 466 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 CLVS1Q8IUQ0 354 aaPredicted RBP6.08□□□□□ -1.44
CD44-225ENST00000527326 CARNMT1Q8N4J0 409 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 RNF169Q8NCN4 708 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 EXD1Q8NHP7 514 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 ZNF417Q8TAU3 575 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 GSDMBQ8TAX9 411 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 DTX3LQ8TDB6 740 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 AFG1LQ8WV93 481 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 RAPGEF4Q8WZA2 1011 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 MAML1Q92585 1016 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 TTC9Q92623 222 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 ESR2Q92731 530 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 NGLY1Q96IV0 654 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 NSL1Q96IY1 281 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 PLEKHA8Q96JA3 519 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 CEP19Q96LK0 163 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 ZNF587Q96SQ5 575 aaPredicted RBP6.08□□□□□ -1.44
CD44-225ENST00000527326 PSMB7Q99436 277 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 MDFIQ99750 246 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 MIPEPQ99797 713 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 TDRD1Q9BXT4 1180 aaKnown RBP6.08□□□□□ -1.44
CD44-225ENST00000527326 EDEM3Q9BZQ6 932 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 CCDC113Q9H0I3 377 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 GLT8D2Q9H1C3 349 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 EPB41L4BQ9H329 900 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 MARCH7Q9H992 704 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 NCOA5Q9HCD5 579 aaKnown RBP6.08□□□□□ -1.44
CD44-225ENST00000527326 C12orf4Q9NQ89 552 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 DIABLOQ9NR28 239 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 MAN1C1Q9NR34 630 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 SLC38A7Q9NVC3 462 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 DDX56Q9NY93 547 aaKnown RBP6.08□□□□□ -1.44
CD44-225ENST00000527326 NCKIPSDQ9NZQ3 722 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 KCNN3Q9UGI6 736 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 SALL4Q9UJQ4 1053 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 FBXO2Q9UK22 296 aaPredicted RBP6.08□□□□□ -1.44
CD44-225ENST00000527326 PLAGL2Q9UPG8 496 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 LZTS1Q9Y250 596 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 DIS3Q9Y2L1 958 aaKnown RBP6.08□□□□□ -1.44
CD44-225ENST00000527326 MAD1L1Q9Y6D9 718 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 CEPT1Q9Y6K0 416 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 SLIT1O75093 1534 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 KIF1BO60333 1816 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 LAMA4Q16363 1823 aa6.08□□□□□ -1.44
CD44-225ENST00000527326 ATP8B3O60423 1300 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 ACEP12821 1306 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 FRMPD4Q14CM0 1322 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 BTBD18B2RXH4 712 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 PALMO75781 387 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 TOMM70O94826 608 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 ALX3O95076 343 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 PGM3O95394 542 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 CD48P09326 243 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 CALM1P0DP23 149 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 CALM2P0DP24 149 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 CALM3P0DP25 149 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 CD9P21926 228 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 JAK1P23458 1154 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 ANXA13P27216 316 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 PCSK6P29122 969 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 ADSLP30566 484 aaPredicted RBP6.07□□□□□ -1.44
CD44-225ENST00000527326 GATA4P43694 442 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 CLK1P49759 484 aaKnown RBP6.07□□□□□ -1.44
CD44-225ENST00000527326 KPNA1P52294 538 aaPredicted RBP6.07□□□□□ -1.44
CD44-225ENST00000527326 BLVRAP53004 296 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 FOLH1Q04609 750 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 FCHO2Q0JRZ9 810 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 TRAP1Q12931 704 aaKnown RBP6.07□□□□□ -1.44
CD44-225ENST00000527326 DHX34Q14147 1143 aaKnown RBP6.07□□□□□ -1.44
CD44-225ENST00000527326 MAPRE2Q15555 327 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 NAB2Q15742 525 aa6.07□□□□□ -1.44
CD44-225ENST00000527326 CWF19L2Q2TBE0 894 aaKnown RBP6.07□□□□□ -1.44
CD44-225ENST00000527326 BBS9Q3SYG4 887 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms