RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	KLRC1	P26715	233 aa		5.78	□□□□□ -1.48
CD44-223	ENST00000526553	PEX2	P28328	305 aa		5.78	□□□□□ -1.48
CD44-223	ENST00000526553	DGKE	P52429	567 aa		5.78	□□□□□ -1.48
CD44-223	ENST00000526553	KRT17	Q04695	432 aa		5.78	□□□□□ -1.48
CD44-223	ENST00000526553	EIF2B5	Q13144	721 aa	Known RBP	5.78	□□□□□ -1.48
CD44-223	ENST00000526553	SEMA5A	Q13591	1074 aa		5.78	□□□□□ -1.48
CD44-223	ENST00000526553	DCAF12L1	Q5VU92	463 aa		5.78	□□□□□ -1.48
CD44-223	ENST00000526553	FBXO42	Q6P3S6	717 aa		5.78	□□□□□ -1.48
CD44-223	ENST00000526553	RD3	Q7Z3Z2	195 aa		5.78	□□□□□ -1.48
CD44-223	ENST00000526553	MAVS	Q7Z434	540 aa		5.78	□□□□□ -1.48
CD44-223	ENST00000526553	MICU3	Q86XE3	530 aa		5.78	□□□□□ -1.48
CD44-223	ENST00000526553	MPP5	Q8N3R9	675 aa		5.78	□□□□□ -1.48
CD44-223	ENST00000526553	BOLL	Q8N9W6	283 aa	Known RBP	5.78	□□□□□ -1.48
CD44-223	ENST00000526553	TTC17	Q96AE7	1141 aa		5.78	□□□□□ -1.48
CD44-223	ENST00000526553	C8orf48	Q96LL4	319 aa		5.78	□□□□□ -1.48
CD44-223	ENST00000526553	KLK15	Q9H2R5	256 aa		5.78	□□□□□ -1.48
CD44-223	ENST00000526553	CXorf36	Q9H7Y0	433 aa		5.78	□□□□□ -1.48
CD44-223	ENST00000526553	SERTAD4	Q9NUC0	356 aa		5.78	□□□□□ -1.48
CD44-223	ENST00000526553	ZSCAN32	Q9NX65	697 aa		5.78	□□□□□ -1.48
CD44-223	ENST00000526553	KAT6A	Q92794	2004 aa		5.77	□□□□□ -1.49
CD44-223	ENST00000526553	TMEM233	B4DJY2	109 aa		5.77	□□□□□ -1.49
CD44-223	ENST00000526553	hCG_1984214	I3L0E3	225 aa		5.77	□□□□□ -1.49
CD44-223	ENST00000526553	PROP1	O75360	226 aa		5.77	□□□□□ -1.49
CD44-223	ENST00000526553	CSF1R	P07333	972 aa		5.77	□□□□□ -1.49
CD44-223	ENST00000526553	PTH2R	P49190	550 aa		5.77	□□□□□ -1.49
CD44-223	ENST00000526553	PDE6C	P51160	858 aa		5.77	□□□□□ -1.49
CD44-223	ENST00000526553	ATXN1	P54253	815 aa	Known RBP	5.77	□□□□□ -1.49
CD44-223	ENST00000526553	ZIK1	Q3SY52	487 aa	Predicted RBP	5.77	□□□□□ -1.49
CD44-223	ENST00000526553	PLA1A	Q53H76	456 aa		5.77	□□□□□ -1.49
CD44-223	ENST00000526553	ZNF280B	Q86YH2	543 aa		5.77	□□□□□ -1.49
CD44-223	ENST00000526553	SLC15A3	Q8IY34	581 aa		5.77	□□□□□ -1.49
CD44-223	ENST00000526553	OR56A3	Q8NH54	315 aa		5.77	□□□□□ -1.49
CD44-223	ENST00000526553	SPSB4	Q96A44	273 aa		5.77	□□□□□ -1.49
CD44-223	ENST00000526553	SARAF	Q96BY9	339 aa		5.77	□□□□□ -1.49
CD44-223	ENST00000526553	BTBD1	Q9H0C5	482 aa		5.77	□□□□□ -1.49
CD44-223	ENST00000526553	XPNPEP3	Q9NQH7	507 aa		5.77	□□□□□ -1.49
CD44-223	ENST00000526553	ARHGEF3	Q9NR81	526 aa		5.77	□□□□□ -1.49
CD44-223	ENST00000526553	SACM1L	Q9NTJ5	587 aa		5.77	□□□□□ -1.49
CD44-223	ENST00000526553	OGDHL	Q9ULD0	1010 aa		5.77	□□□□□ -1.49
CD44-223	ENST00000526553	MRPS17	Q9Y2R5	130 aa	Known RBP	5.77	□□□□□ -1.49
CD44-223	ENST00000526553	PYCARD-AS1	I3L0S3	204 aa		5.76	□□□□□ -1.49
CD44-223	ENST00000526553	C1QL1	O75973	258 aa		5.76	□□□□□ -1.49
CD44-223	ENST00000526553	IGLV2-14	P01704	120 aa		5.76	□□□□□ -1.49
CD44-223	ENST00000526553	RPL17	P18621	184 aa	Known RBP	5.76	□□□□□ -1.49
CD44-223	ENST00000526553	KCNA3	P22001	575 aa		5.76	□□□□□ -1.49
CD44-223	ENST00000526553	ITPKB	P27987	946 aa		5.76	□□□□□ -1.49
CD44-223	ENST00000526553	FMO1	Q01740	532 aa		5.76	□□□□□ -1.49
CD44-223	ENST00000526553	SP2	Q02086	613 aa		5.76	□□□□□ -1.49
CD44-223	ENST00000526553	AKNAD1	Q5T1N1	836 aa		5.76	□□□□□ -1.49
CD44-223	ENST00000526553	WDR53	Q7Z5U6	358 aa	Predicted RBP	5.76	□□□□□ -1.49
CD44-223	ENST00000526553	RAPGEF4	Q8WZA2	1011 aa		5.76	□□□□□ -1.49
CD44-223	ENST00000526553	TIFA	Q96CG3	184 aa		5.76	□□□□□ -1.49
CD44-223	ENST00000526553	MSLNL	Q96KJ4	702 aa		5.76	□□□□□ -1.49
CD44-223	ENST00000526553	HAPLN3	Q96S86	360 aa		5.76	□□□□□ -1.49
CD44-223	ENST00000526553	PPP1R9B	Q96SB3	815 aa		5.76	□□□□□ -1.49
CD44-223	ENST00000526553	ZNF287	Q9HBT7	754 aa		5.76	□□□□□ -1.49
CD44-223	ENST00000526553	GLOD4	Q9HC38	313 aa		5.76	□□□□□ -1.49
CD44-223	ENST00000526553	DDX21	Q9NR30	783 aa	Known RBP eCLIP	5.76	□□□□□ -1.49
CD44-223	ENST00000526553	ARPP21	Q9UBL0	812 aa	Predicted RBP	5.76	□□□□□ -1.49
CD44-223	ENST00000526553	SPATA31A6	Q5VVP1	1343 aa		5.75	□□□□□ -1.49
CD44-223	ENST00000526553	CCP110	O43303	1012 aa		5.75	□□□□□ -1.49
CD44-223	ENST00000526553	IL6R	P08887	468 aa	Predicted RBP	5.75	□□□□□ -1.49
CD44-223	ENST00000526553	EBLN1	P0CF75	366 aa		5.75	□□□□□ -1.49
CD44-223	ENST00000526553	GPD1	P21695	349 aa		5.75	□□□□□ -1.49
CD44-223	ENST00000526553	DRD4	P21917	467 aa		5.75	□□□□□ -1.49
CD44-223	ENST00000526553	FBL	P22087	321 aa	Known RBP	5.75	□□□□□ -1.49
CD44-223	ENST00000526553	LIPA	P38571	399 aa		5.75	□□□□□ -1.49
CD44-223	ENST00000526553	ALDH9A1	P49189	494 aa		5.75	□□□□□ -1.49
CD44-223	ENST00000526553	CLCN2	P51788	898 aa		5.75	□□□□□ -1.49
CD44-223	ENST00000526553	INSC	Q1MX18	579 aa		5.75	□□□□□ -1.49
CD44-223	ENST00000526553	FAM153C	Q494X1	144 aa		5.75	□□□□□ -1.49
CD44-223	ENST00000526553	TREML2	Q5T2D2	321 aa		5.75	□□□□□ -1.49
CD44-223	ENST00000526553	TSTD2	Q5T7W7	516 aa		5.75	□□□□□ -1.49
CD44-223	ENST00000526553	ANKRD16	Q6P6B7	361 aa		5.75	□□□□□ -1.49
CD44-223	ENST00000526553	ARHGEF25	Q86VW2	580 aa		5.75	□□□□□ -1.49
CD44-223	ENST00000526553	KRT78	Q8N1N4	520 aa		5.75	□□□□□ -1.49
CD44-223	ENST00000526553	BPIFB1	Q8TDL5	484 aa		5.75	□□□□□ -1.49
CD44-223	ENST00000526553	NUP62CL	Q9H1M0	184 aa		5.75	□□□□□ -1.49
CD44-223	ENST00000526553	IL17RB	Q9NRM6	502 aa		5.75	□□□□□ -1.49
CD44-223	ENST00000526553	ASB6	Q9NWX5	421 aa		5.75	□□□□□ -1.49
CD44-223	ENST00000526553	COL20A1	Q9P218	1284 aa		5.75	□□□□□ -1.49
CD44-223	ENST00000526553	OVOL3	O00110	214 aa		5.74	□□□□□ -1.49
CD44-223	ENST00000526553	KIF3B	O15066	747 aa		5.74	□□□□□ -1.49
CD44-223	ENST00000526553	MAP4K4	O95819	1239 aa	Predicted RBP	5.74	□□□□□ -1.49
CD44-223	ENST00000526553	JUP	P14923	745 aa		5.74	□□□□□ -1.49
CD44-223	ENST00000526553	ZKSCAN1	P17029	563 aa	Predicted RBP	5.74	□□□□□ -1.49
CD44-223	ENST00000526553	NDUFB7	P17568	137 aa		5.74	□□□□□ -1.49
CD44-223	ENST00000526553	CCT8	P50990	548 aa		5.74	□□□□□ -1.49
CD44-223	ENST00000526553	RPS16	P62249	146 aa	Known RBP	5.74	□□□□□ -1.49
CD44-223	ENST00000526553	NHLH1	Q02575	133 aa		5.74	□□□□□ -1.49
CD44-223	ENST00000526553	C3orf38	Q5JPI3	329 aa		5.74	□□□□□ -1.49
CD44-223	ENST00000526553	SESTD1	Q86VW0	696 aa		5.74	□□□□□ -1.49
CD44-223	ENST00000526553	OSCP1	Q8WVF1	389 aa		5.74	□□□□□ -1.49
CD44-223	ENST00000526553	SOCS4	Q8WXH5	440 aa		5.74	□□□□□ -1.49
CD44-223	ENST00000526553	GLG1	Q92896	1179 aa		5.74	□□□□□ -1.49
CD44-223	ENST00000526553	ZNF764	Q96H86	408 aa	Predicted RBP	5.74	□□□□□ -1.49
CD44-223	ENST00000526553	CPNE5	Q9HCH3	593 aa		5.74	□□□□□ -1.49
CD44-223	ENST00000526553	TRMT13	Q9NUP7	481 aa	Known RBP	5.74	□□□□□ -1.49
CD44-223	ENST00000526553	ST3GAL5	Q9UNP4	418 aa		5.74	□□□□□ -1.49
CD44-223	ENST00000526553	LOC102723971	A0A1B0GUV8	181 aa		5.73	□□□□□ -1.49

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