RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 CSNK1G1Q9HCP0 422 aa22.02■■□□□ 1.12
CD44-222ENST00000526025 FAM49BQ9NUQ9 324 aa22.02■■□□□ 1.12
CD44-222ENST00000526025 AJAP1Q9UKB5 411 aaPredicted RBP22.02■■□□□ 1.12
CD44-222ENST00000526025 DENND4CQ5VZ89 1909 aa22.02■■□□□ 1.11
CD44-222ENST00000526025 RNF225M0QZC1 329 aaPredicted RBP22.01■■□□□ 1.11
CD44-222ENST00000526025 CCL16O15467 120 aa22.01■■□□□ 1.11
CD44-222ENST00000526025 KRT5P13647 590 aa22.01■■□□□ 1.11
CD44-222ENST00000526025 CCDC130P13994 396 aa22.01■■□□□ 1.11
CD44-222ENST00000526025 EPHA5P54756 1037 aa22.01■■□□□ 1.11
CD44-222ENST00000526025 JAM2P57087 298 aa22.01■■□□□ 1.11
CD44-222ENST00000526025 POLR2FP61218 127 aaKnown RBP22.01■■□□□ 1.11
CD44-222ENST00000526025 DRAP1Q14919 205 aaPredicted RBP22.01■■□□□ 1.11
CD44-222ENST00000526025 FIGNQ5HY92 759 aa22.01■■□□□ 1.11
CD44-222ENST00000526025 PPP1R26Q5T8A7 1209 aaPredicted RBP22.01■■□□□ 1.11
CD44-222ENST00000526025 GAS2L3Q86XJ1 694 aa22.01■■□□□ 1.11
CD44-222ENST00000526025 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.01■■□□□ 1.11
CD44-222ENST00000526025 PSMG2Q969U7 264 aa22.01■■□□□ 1.11
CD44-222ENST00000526025 MED10Q9BTT4 135 aa22.01■■□□□ 1.11
CD44-222ENST00000526025 EDEM3Q9BZQ6 932 aa22.01■■□□□ 1.11
CD44-222ENST00000526025 PNPLA8Q9NP80 782 aa22.01■■□□□ 1.11
CD44-222ENST00000526025 DMAP1Q9NPF5 467 aaPredicted RBP22.01■■□□□ 1.11
CD44-222ENST00000526025 PRDM6Q9NQX0 595 aa22.01■■□□□ 1.11
CD44-222ENST00000526025 KRT82Q9NSB4 513 aa22.01■■□□□ 1.11
CD44-222ENST00000526025 IFNKQ9P0W0 207 aa22.01■■□□□ 1.11
CD44-222ENST00000526025 USP15Q9Y4E8 981 aaPredicted RBP22.01■■□□□ 1.11
CD44-222ENST00000526025 GRXCR2A6NFK2 248 aa22■■□□□ 1.11
CD44-222ENST00000526025 F8VZ95 297 aa22■■□□□ 1.11
CD44-222ENST00000526025 FOXN3O00409 490 aaPredicted RBP22■■□□□ 1.11
CD44-222ENST00000526025 CLDN5O00501 218 aa22■■□□□ 1.11
CD44-222ENST00000526025 EPHB6O15197 1021 aa22■■□□□ 1.11
CD44-222ENST00000526025 FAM200BP0CF97 657 aa22■■□□□ 1.11
CD44-222ENST00000526025 ANXA13P27216 316 aa22■■□□□ 1.11
CD44-222ENST00000526025 BPIFB4P59827 614 aa22■■□□□ 1.11
CD44-222ENST00000526025 RAPGEF1Q13905 1077 aa22■■□□□ 1.11
CD44-222ENST00000526025 SMAD2Q15796 467 aaKnown RBP22■■□□□ 1.11
CD44-222ENST00000526025 LCLAT1Q6UWP7 414 aa22■■□□□ 1.11
CD44-222ENST00000526025 FMNL3Q8IVF7 1028 aa22■■□□□ 1.11
CD44-222ENST00000526025 ZNF512Q96ME7 567 aaPredicted RBP22■■□□□ 1.11
CD44-222ENST00000526025 PIDD1Q9HB75 910 aa22■■□□□ 1.11
CD44-222ENST00000526025 WDR6Q9NNW5 1121 aaKnown RBP22■■□□□ 1.11
CD44-222ENST00000526025 EHD2Q9NZN4 543 aa22■■□□□ 1.11
CD44-222ENST00000526025 MYO6Q9UM54 1294 aa22■■□□□ 1.11
CD44-222ENST00000526025 DOCK8Q8NF50 2099 aa21.99■■□□□ 1.11
CD44-222ENST00000526025 OBSL1O75147 1896 aa21.99■■□□□ 1.11
CD44-222ENST00000526025 O00370 1275 aa21.99■■□□□ 1.11
CD44-222ENST00000526025 AP1G2O75843 785 aa21.99■■□□□ 1.11
CD44-222ENST00000526025 SOAT2O75908 522 aa21.99■■□□□ 1.11
CD44-222ENST00000526025 CSH1P0DML2 217 aa21.99■■□□□ 1.11
CD44-222ENST00000526025 CSH2P0DML3 217 aa21.99■■□□□ 1.11
CD44-222ENST00000526025 CD19P15391 556 aa21.99■■□□□ 1.11
CD44-222ENST00000526025 PTPN2P17706 415 aa21.99■■□□□ 1.11
CD44-222ENST00000526025 GRIK1P39086 918 aa21.99■■□□□ 1.11
CD44-222ENST00000526025 MRPS5P82675 430 aaKnown RBP21.99■■□□□ 1.11
CD44-222ENST00000526025 CBX2Q14781 532 aaPredicted RBP21.99■■□□□ 1.11
CD44-222ENST00000526025 CLUL1Q15846 466 aa21.99■■□□□ 1.11
CD44-222ENST00000526025 CNGA2Q16280 664 aa21.99■■□□□ 1.11
CD44-222ENST00000526025 PTCRAQ6ISU1 281 aaPredicted RBP21.99■■□□□ 1.11
CD44-222ENST00000526025 ANKRD52Q8NB46 1076 aa21.99■■□□□ 1.11
CD44-222ENST00000526025 TRMT2BQ96GJ1 504 aaKnown RBP21.99■■□□□ 1.11
CD44-222ENST00000526025 NUP58Q9BVL2 599 aa21.99■■□□□ 1.11
CD44-222ENST00000526025 DUSP16Q9BY84 665 aa21.99■■□□□ 1.11
CD44-222ENST00000526025 UBXN6Q9BZV1 441 aa21.99■■□□□ 1.11
CD44-222ENST00000526025 XPO4Q9C0E2 1151 aaKnown RBP21.99■■□□□ 1.11
CD44-222ENST00000526025 TMEM30AQ9NV96 361 aa21.99■■□□□ 1.11
CD44-222ENST00000526025 ITIH6Q6UXX5 1313 aa21.99■■□□□ 1.11
CD44-222ENST00000526025 XIRP2A4UGR9 3374 aa21.98■■□□□ 1.11
CD44-222ENST00000526025 F8VP50 259 aa21.98■■□□□ 1.11
CD44-222ENST00000526025 MED7O43513 233 aa21.98■■□□□ 1.11
CD44-222ENST00000526025 MICAL2O94851 1124 aa21.98■■□□□ 1.11
CD44-222ENST00000526025 FGF19O95750 216 aa21.98■■□□□ 1.11
CD44-222ENST00000526025 NPR3P17342 541 aa21.98■■□□□ 1.11
CD44-222ENST00000526025 TFF2Q03403 129 aa21.98■■□□□ 1.11
CD44-222ENST00000526025 PTK2Q05397 1052 aa21.98■■□□□ 1.11
CD44-222ENST00000526025 DDR2Q16832 855 aa21.98■■□□□ 1.11
CD44-222ENST00000526025 CLEC20AQ6ZU45 233 aa21.98■■□□□ 1.11
CD44-222ENST00000526025 DNAJB7Q7Z6W7 309 aaPredicted RBP21.98■■□□□ 1.11
CD44-222ENST00000526025 SCN4BQ8IWT1 228 aa21.98■■□□□ 1.11
CD44-222ENST00000526025 TFAP2BQ92481 460 aa21.98■■□□□ 1.11
CD44-222ENST00000526025 MYRFLQ96LU7 910 aa21.98■■□□□ 1.11
CD44-222ENST00000526025 SMOQ99835 787 aa21.98■■□□□ 1.11
CD44-222ENST00000526025 APOL5Q9BWW9 433 aa21.98■■□□□ 1.11
CD44-222ENST00000526025 TTYH3Q9C0H2 523 aa21.98■■□□□ 1.11
CD44-222ENST00000526025 COMMD8Q9NX08 183 aa21.98■■□□□ 1.11
CD44-222ENST00000526025 DNMT3BQ9UBC3 853 aaKnown RBP21.98■■□□□ 1.11
CD44-222ENST00000526025 TSPAN16Q9UKR8 245 aa21.98■■□□□ 1.11
CD44-222ENST00000526025 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.98■■□□□ 1.11
CD44-222ENST00000526025 CLUHO75153 1309 aa21.98■■□□□ 1.11
CD44-222ENST00000526025 ADORA2BP29275 332 aa21.97■■□□□ 1.11
CD44-222ENST00000526025 GNA15P30679 374 aa21.97■■□□□ 1.11
CD44-222ENST00000526025 CLCN1P35523 988 aa21.97■■□□□ 1.11
CD44-222ENST00000526025 SOX5P35711 763 aa21.97■■□□□ 1.11
CD44-222ENST00000526025 USP8P40818 1118 aa21.97■■□□□ 1.11
CD44-222ENST00000526025 GPR15P49685 360 aa21.97■■□□□ 1.11
CD44-222ENST00000526025 CACNA2D1P54289 1103 aa21.97■■□□□ 1.11
CD44-222ENST00000526025 BCAT1P54687 386 aa21.97■■□□□ 1.11
CD44-222ENST00000526025 SLC8A3P57103 927 aa21.97■■□□□ 1.11
CD44-222ENST00000526025 PABPC1LQ4VXU2 614 aaKnown RBP21.97■■□□□ 1.11
CD44-222ENST00000526025 PKDCCQ504Y2 493 aa21.97■■□□□ 1.11
CD44-222ENST00000526025 SPAG5Q96R06 1193 aa21.97■■□□□ 1.11
CD44-222ENST00000526025 TTLL2Q9BWV7 592 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms